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7 protocols using af5195

1

Western Blot Analysis of Colon Tissue

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Total protein was extracted from 80 mg samples of colon tissue with 400 μL of radioimmunoprecipitation assay buffer (Solarbio, Beijing, China). Proteins (10 μg) were separated using SDS-polyacrylamide gel electrophoresis (10% gels) and then were transferred to polyvinylidene fluoride membranes. The membranes were blocked in 5% skim milk for 2 hours and incubated with one of the following primary antibodies overnight at 4°C : TLR4 (1 : 1000, 19811-1-AP, Proteintech, Wuhan, China), MyD88 (1 : 2000, AF5195, Affinity Bioscience, Beijing, China), NF-κB (1 : 2000, 10745-1-AP, Proteintech, Wuhan, China), p–NF–κB (1 : 2000, AF3387, Affinity Bioscience, Beijing, China), cleaved caspase-3 (19677-1-1AP, 1 : 2000, Proteintech, Wuhan, China), Bcl2 (1 : 3000, 26593-1-AP, Proteintech, Wuhan, China), Bax (1 : 12,000, 50599-2-Ig, Proteintech, Wuhan, China), or β-actin (1 : 50,000, 6609-1-Ig, Proteintech, Wuhan, China). On the next day, the membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit IgG (H + L) (1 : 10000, Affinity Bioscience, Beijing, China) or goat anti-mouse IgG (H + L) (1 : 10000, SA00001-1, Affinity Bioscience, Beijing, China) for 2 hours at room temperature. An ECL Chemiluminescent Kit (Beyotime, Shanghai, China) was utilized to detect the protein bands. Gel-Pro Analyzer software (Version: 4.0.0.4) was used to quantify the band intensities.
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2

Western Blot Analysis of Nrf2 Pathway

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Samples were lysed in a RIPA buffer in the presence of protease and phosphatase inhibitors. Proteins were resolved on 5–15% SDS‐polyacrylamide gels and transferred to PVDF membranes. After blocking with 5% BSA, membranes were incubated overnight at 4 °C with the appropriate primary antibodies. After washing with TBS‐0.1% tween‐20 for 5 min, the membranes were soaked in horseradish peroxidase‐conjugated secondary antibodies (1:5000 dilution) for 2 h. Membranes were washed again before visualization. The Fdbio‐Dura ECL Kit (Fudebio‐tech, China) was used for protein band visualization in photographic films (Biostep, Germany). The following antibodies were used for western blot analysis: p‐Nrf2 (Ab76026, Abcam), NQO1(Ab80588, Abcam), HO‐1(Ab68477, Abcam), BAX (Ab32503, Abcam), Bcl‐2 (Ab182858, Abcam), TLR4 (AF7017, Affinity), MyD88 (AF5195, Affinity), IL‐1β (AF5103, Affinity), IL‐6 (DF6087, Affinity), β‐actin (AF7018, Affinity), goat anti‐rabbit IgG (H+L) HRP (S0001, Affinity) were used as secondary antibodies.
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3

Quantifying Key Inflammatory Mediators in Rat Lungs

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The levels of NF-κB, TLR2, and MYD88 in lung tissues were tested using immunohistochemistry. Paraffin-embedded rat lung tissue sections were deparaffinized to water, antigen retrieval was performed in citrate buffer of pH 6.0, and microwave treatment was performed for 20 min. The sections were placed in a 3% H2O2 solution, incubated at room temperature in the dark for 25 min, and serum-blocked for 30 min. The blocking solution was gently shaken off, and the primary antibodies MyD88 antibody (AF5195, 1 : 125, Affinity), NF-kBp65 antibody (AF5006, 1 : 125, Affinity), and TLR2 antibody (DF7002, 1 : 125, Affinity) were added dropwise to the section and incubated overnight at 4°C. The sections were placed in PBS and shaken 3 times with bleach. After the sections were dried, the secondary antibody (HRP) (S0010, 1 : 200, Affinity) was added dropwise and incubated for 50 min. Then, the slides were washed, and then DAB chromogenic solution was added dropwise to develop color. Finally, hematoxylin was used to stain the slides for 3 min. The slides were rinsed with running water, and then dehydrated and mounted.
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4

Characterization of Chicken Fibroblast Cell Line

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The chicken embryonic fibroblast cell line (DF-1) was a kind gift from Prof. Xiufan Liu (Yangzhou University, Yangzhou, China). The velogenic NDV strain SS1 (GenBank no. KP742770.1) was isolated and preserved in our laboratory (Duan et al., 2015 ), and the lentogenic NDV vaccine virus LaSota (GenBank no. AF077761) was purchased from the China Institute of Veterinary Drug Control (Beijing, China). The rabbit polyclonal antibodies against SPOP (DF12106), MyD88 (AF5195), and GAPDH (AF7021), and the mouse monoclonal antibodies against HA tag (T0008), Myc tag (BF8036), Flag tag (T0003), and GFP tag (T0005) were purchased from Affinity Biosciences (Cincinnati, OH). The rabbit polyclonal antibody against Histone H3 was purchased from Proteintech Group, Inc (Chicago, IL).
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5

Western Blot Analysis of Protein Expression

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Western and IP cell lysis buffer (Beyotime), containing 1% PMSF (Amresco), was used to cleave proteins for 30 min on ice. After 30 min, the lysed cells were centrifuged at 12,000 × g for 10 min at 4°C to extract the supernatant for protein quantification using the BCA Protein Assay kit (Thermo Fisher Scientific, Inc.), and boiled for 10 min by adding 5X SDS. The total amount of protein (50 µg) was added to the prepared 12% SDS-PAGE gels for electrophoretic separation and transferred to 0.45 µm PVDF membranes (Amersham Hybond, GE Healthcare). The membranes were then blocked with 1% albumin from bovine serum (Amresco) for 2 h. Next, the membranes were incubated overnight with diluted MyD88 (1:1,000, AF5195; Affinity), GAPDH (1:1,000, ab181602; Abcam), NF-κB p65 (1:1,000, AF5006; Affinity), p-NF-κB p65 (1:1,000, #3033; Cell Signaling), c-jun (1:1,000, bs-0670R; Bioss), and p-c-jun (1:1,000, bs-3172R; Bioss) antibodies on a shaker at 4°C. The membranes were washed for 10 min three times with TBS-T (0.1% Tween-20) at room temperature, incubated in goat anti-rabbit IgG H&L (HRP) (1:2,000, ab7090; Abcam) for 1 h, and then washed. Subsequently the membranes were exposed to enhanced chemiluminescence substrate detection solution (Lulong Biotech).
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6

Western Blot Analysis of Cellular Signaling

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Cells and aortas were lysed in RIPA buffer (Beyotime, Guangzhou, China), and 40 µg total protein was resolved in 12% or 10% SDS-PAGE gels and transferred onto polyvinylidene difluoride membrane, which was then blocked with 5% skimmed milk. Primary antibodies against iNOS (1:2,000, AF0199, Affinity, USA), COX-2 (1:2,000, AF7003, Affinity), CHOP (1:1,000, 2895, CST, USA), BCL-2 (1:1,000, YT0470, ImmunoWay, USA), BAX (1:1,000, YT0455, ImmunoWay), cleaved Caspase 3 (1:1,000, AF7022, Affinity), cleaved Caspase 8 (1:1,000, AF5267, Affinity), TIPE2 (1:1,000, DF3326, Affinity), TLR4 (1:2,000, AF7017, Affinity), TRIF (1:2,000, DF6289, Affinity), MyD88 (1:2,000, AF5195, Affinity), AKT (1:1000, YM3618, ImmunoWay), p-AKTSer473 (1:1000, YP0006, ImmunoWay), and β-actin (1:10,000, AF7018, Affinity) were used. HRP-conjugated corresponding secondary antibodies (1:10,000, S0001 and S0002, Affinity) were used, and antigen–antibody reactions were visualized using an enhanced chemiluminescence detection kit (E411-05, Vazyme, China). ImageJ 1.48 (NIH, Maryland, USA) was used to quantify the intensities of each band. β-actin served as an internal reference.
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7

Western Blot Analysis of Inflammatory Markers

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Western blot analysis was following the protocol used in our laboratory (26 (link)). The quantification of protein bands was performed using the Amersham Imager 680 system (General Electric Company, USA). The density of the specific bands was measured utilizing ImageJ software. The following antibodies were used for this research: NF-κB antibody (ab32536, Abcam Plc, UK), p-NF-κB antibody (ab86299), zonula occludens-1 (ZO-1) antibody (AF5145, Affinity Biosciences, USA), claudin-1 antibody (AF0127), occludin antibody (AF4605), TLR4 antibody (AF7017), MyD88 antibody (AF5195), and beta-actin monoclonal antibody (AF7018).
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