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2 protocols using alexafluor 647 conjugated anti mouse

1

Immunofluorescence Analysis of DNA Damage Markers

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Cells were fixed with 4% paraformaldehyde (in PBS; Carl Roth) and incubated in blocking solution (BS: 1% BSA, 0.4% Triton X‐100 in PBS). Following, samples were incubated in primary antibody solutions against H2AX phosphorylated at serine‐139 (γH2AX; 1 : 1000 in BS; Merck Millipore), 53BP1 (1 : 500 in BS; Novus Biologicals), or RAD51 (1 : 250 in BS; Santa Cruz), washed in PBS and incubated in AlexaFluor 555‐conjugated anti‐rabbit (1 : 500 in BS; Abcam) or AlexaFluor 647‐conjugated anti‐mouse (1 : 500 in BS; Thermo Fisher) secondary antibody solutions. Afterward, samples were stained with 1 µg·mL−1 DAPI (Sigma‐Aldrich) and mounted with ProLong Gold Antifade Mountant (Thermo Scientific). Images were examined using a Zeiss AxioImager ApoTome microscope (structured illumination) (Carl Zeiss). zen 2.0 lite software (Carl Zeiss) was used for image analysis.
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2

Embryonic Protein Expression Analysis

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Antibodies used for analysis of embryos include rabbit anti–β-tubulin (Abcam, ab6046, polyclonal, lot: GR31927-5), mouse anti–DICER-1 (Santa Cruz Biotechnology, sc-136981, A-2, lot: I1817), mouse anti–CDX-2 (Abcam, ab157524, CDX2-88, lot: GR300552-6), anti-rabbit anti-CDX2 antibody (Abcam, ab76541, lot #GR300552-18), rabbit anti-SOX-2 (EMD Millipore, AB5603, polyclonal, lot: NG1863962 and 3254559), goat anti–glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Sigma-Aldrich, SAB2500450, polyclonal, lot: 6377C2), rabbit anti-GADD45a (Invitrogen, MA5-17014, D.81.E, lot: R12274975), Alexa Fluor 647 anti-mouse/human CD324 (E-cadherin) antibody (BioLegend catalog no. 147307, lot no. B254794), Alexa Fluor 594 FGFR-1 antibody (Santa Cruz Biotechnology, catalog no. sc-57132 AF594, lot no. J0218), Rhodamine anti–β-actin immunoglobulin G (Bio-Rad, 12004163, lot: 64219909), hFAB Rhodamine anti-tubulin primary antibody (Bio-Rad, 12004165, lot no. 64210670). Donkey secondary antibodies Alexa Fluor 647–conjugated anti-mouse (A31571, lot #1903516), Alexa Fluor 594–conjugated anti-mouse (A21203, lot #2066086), and Alexa Fluor 488-conjugated anti-rabbit (A21206) were purchased from Thermo Fisher Scientific, CA, USA. All bands migrated to approximate molecular masses stated by manufacturers or previously published studies (table S2).
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