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Ultra 888 emccd

Manufactured by Oxford Instruments

The Ultra 888 EMCCD is a high-performance electron-multiplying charge-coupled device (EMCCD) camera designed for low-light imaging applications. It features a large sensor size, high quantum efficiency, and on-chip electron multiplication for enhanced sensitivity. The core function of the Ultra 888 EMCCD is to capture and amplify low-intensity signals, enabling the detection of faint details in a variety of scientific and industrial applications.

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8 protocols using ultra 888 emccd

1

Quantitative FRAP Analysis of Microtubules

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FRAP experiments were performed with a Nikon Ti2-E microscope equipped with a Yokogawa spinning disk unit (CSU-W1; 50 µM pinhole size), 100× silicone objective (Nikon CFI SR HP Plan Apochromat Lambda S 100XC Sil, 1.35 NA), 100 mW lasers for λ 488 nm and 561 nm (for imaging of DNA and β-tubulin), an EMCCD (Andor iXon Ultra 888 EMCCD, 1024 × 1024 array, 13 µM pixel size), and a 50 mW stimulation laser used for FRAP (LUN-F λ405nm laser launch). The parameters for imaging were 2 × 2 binning, 30 MHz camera acquisition speed, 20% laser intensity for λ488 nm with 100 ms exposure time, 2% laser intensity for the FRAP 405 nm laser, and an EM gain multiplier of 300. Images were analyzed using Nikon Elements software.
Worms were grown on perm-1 RNAi feeding plates (NGM + 0.1 mM IPTG) for 18 h at 20°C, then dissected in osmotically balanced buffer containing 5 µg/ml nocodazole and 15 µm polystyrene microparticles (74964; Sigma-Aldrich) to prevent squishing when placed between a coverslip and the glass slide.
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2

Fluorescence and DIC Microscopy Imaging

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Fluorescence and DIC images were acquired on an Olympus IX73 epi-fluorescent microscope fitted with an Andor iXon Ultra 888 EMCCD and controlled by MetaMorph (v7.8). Fluorescence illumination was provided by a Lumencor Spectra X light engine containing a solid state light source. DAPI: excitation filter = 390 (40) nm, emission filter = 435 (48) nm. GFP: excitation filter = 482 (18) nm, emission filter = 528 (38) nm. NIR: excitation filter = 640 (14) nm. Emission filter = 705 (72) nm.
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3

Wound Healing Assay by Live Cell Imaging

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Cell migration was stimulated by making an infinite scratch wound. The cells were allowed to recover for a period of 2 hr before imaging. Images were acquired using a X10 phase objective on a Lecia DMI 4000 equipped with a Hamamatsu ImagEM EMCCD camera. Images were captured every 5 min for 10 hr. Migration rates were measured as the area covered by the edge of the wound in the field of view per unit time using Fiji (NIH). For TIRF wound-healing experiments, cells were imaged on a Nikon Ti with a X100, 1.49 NA objective using the 488 nm laser and an Andor iXon Ultra 888 EMCCD.
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4

Actin Motility Assay with Myosin-7a

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The sliding actin in vitro motility assay was performed following a standard protocol69 with minor modifications. Full-length myosin-7a was bound to the coverslip surface in high salt buffers (0.2 mg/ml myosin in 500 mM KCl, 20 mM MOPS, 5 mM MgCl2, 0.1 mM EGTA, 1 mM DTT, pH 7.4). The actin motility was examined in the final assay buffer (150 mM KCl, 20 mM MOPS, 5 mM MgCl2, 0.1 mM EGTA, 1 mM ATP, 50 mM DTT, 2.5 mg/ml glucose, 100 µg/ml glucose oxidase, 40 µg/ml catalase, pH 7.4) in the absence or presence of 500 nM M7BP at room temperature. Movies were collected on an inverted Nikon Eclipse Ti-E microscope with an H-TIRF module attachment, a CFI60 Apochromat TIRF 100× Oil Immersion Objective Lens (N.A. 1.49, W.D. 0.12 mm, F.O.V 22 mm) and an EMMCD camera (Andor iXon Ultra 888 EMCCD, 1024 × 1024 array, 13 μm pixel). 100 ms exposures were acquired every 30 s for 30 min. Four movies were collected and analyzed for each condition. Where required, movies were drift corrected using the ImageJ/FIJI plugin Image Stabilizer.
Motility was quantified using the FAST program70 (link). A tolerance filter of 33% was used to exclude intermittently moving filaments and a minimum velocity filter of 0.1 nm/s was used to exclude stuck filaments.
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5

Imaging MDA-MB 231 Breast Cancer Cells

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MDA-MB 231 cells obtained from Caliper Life Sciences. MDA-MB 231 human breast cancer cells were seeded on to an eight well chamber slide (Ibidi) at a density of 1 × 104 cells per well 24 h before imaging. Cells were cultured in Dulbeccos Modified Eagles Media supplemented (DMEM) with 10% fetal bovine serum (FBS), 1% L-Glutamine, and penicillin-streptomycin (1000 U/mL), and incubated at 37 °C and 5% CO2. The slide was place on the microscope stage surrounded by an incubator to maintain the temperature at 37 °C and CO2 at 5%. DIC imaging was used to choose a field of view and focus on a group of cells. Fluorescence and DIC images were acquired on an Olympus IX73 epi-fluorescent microscope fitted with an Andor iXon Ultra 888 EMCCD and controlled by MetaMorph (v7.8). Fluorescence illumination was provided by a Lumencor Spectra X light engine containing a solid-state light source. NIR: excitation filter = 640 (14) nm, emission filter = 705 (72) nm. Images were acquired using a 60×/1.42 oil PlanApo objective (Olympus). Image processing was completed by using software ImageJ 1.52n (National Institutes of Health, USA).
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6

Fabrication of 1D Photonic Crystal

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BK7 glass was cleaned with piranha solution (H2SO4:H2O2 = 3:1 v/v) at 180 °C for 10 min, followed by sonication for 5 min in acetone and isopropanol (IPA), respectively. Caution. Piranha solution is extremely corrosive, exothermic, and potentially explosive. Therefore, it needs to be handled carefully under consideration of safety. The substrate was then triplerinsed with deionized (DI) water and blow dried with nitrogen gas. The TiO2 layer was deposited on the substrate via a Magnetron sputterer (Denton Explorer-14). SiO2 and Si defect layers were deposited by plasma-enhanced chemical vapor deposition (PECVD, Oxford Plasmalab 100). The thickness and the RI with extinction coefficient of each layer were measured by an ellipsometer (Woollam VASE) after each deposition process. In addition, the thickness and uniformity of each layer were observed by environmental scanning electron microscopy (FEI Quanta 600 ESEM). The reflection spectra of the fabricated 1D PhC were measured in Kretschmann configuration. The 1D PhC was attached to a BK7 prism via RI matching gel (Fiber Instrument Sales). White light (Thorlabs; SLS201) was used with a collimator (Thorlabs; RC02FC-P01) and was s-polarized by a polarizer (Melles Griot). The reflected light was detected by spectrometers (Ocean Optics USB4000 and Acton SpectraPro 2300i connected with Andor iXon Ultra 888 EMCCD).
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7

Wound Healing Assay with Live Cell Imaging

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Cell migration was stimulated by making an infinite scratch wound. The cells were allowed to recover for a period of 2 hours before imaging. Images were acquired using a 10X phase objective on a Lecia DMI 4000 equipped with a Hamamatsu ImagEM EMCCD camera. Images were captured every 5 minutes for 10 hours. Migration rates were measured as the area covered by the edge of the wound in the field of view per unit time using Fiji (NIH). For TIRF wound healing experiments, cells were imaged on a Nikon Ti with a 100X, 1.49 NA objective using the 488nm laser, and an Andor iXon Ultra 888 EMCCD.
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8

Visualizing Actin Filament Motility on NM2A-HMM

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In vitro motility assays were performed as described [89] . Briefly, 60 μl of NM2A-GFP-Flag HMM molecules (0.2 mg/ml) in motility buffer (MB: 20 mM MOPS, pH 7.3, 0.1 mM EGTA, 2 mM MgCl 2 ) with 0.5 M NaCl were trapped in a flow cell. NM2A-GFP-Flag HMM molecules attached to the coverslip were further incubated with 50 μl MB with 0.5 M NaCl and 1 mg/ml BSA, washed in MB with 50 mM NaCl (LS buffer) and incubated for 4 min with 35 μl of 1 mM ATP, 0.2 mM CaCl 2 , 1mM ATP, 1 μM CaM, 1 nM MLCK and 10 μM of unlabeled actin in LS buffer. Coverslips were washed in LS buffer and incubated with 30 μl of labelled actin filaments (20 nM Rhodamine phalloidin actin in 50 mM DTT) for 35 s. The excess solution was removed and the flow cell was loaded for 1 min with 40 μl of MB with 0.7% methylcellulose, 1mM ATP, 50 mM KCl, 50 mM DTT, 2.5 mg/ml glucose, 2.5 μg/ml glucose oxidase, and 45 μg/ml catalase. The slides were imaged at 25ºC, at 5 s intervals for 2 min, on an inverted Nikon Eclipse Ti-E microscope with an H-TIRF module attachment, a CFI60 Apochromat TIRF 100x Oil Immersion Objective Lens (N.A. 1.49, W.D. 0.12 mm, F.O.V 22 mm) and an EMCCD camera (Andor iXon Ultra 888 EMCCD, 1024 × 1024 array, pixel size: 13 μm). Velocity of the actin filaments on top of the different NM2A-GFP-Flag HMM molecules was quantified using the FAST algorithm described in [90] .
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