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3 protocols using phosphorylated p65

1

Western Blot Analysis of Kidney Proteins

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The total protein was extracted from kidney tissues as described 25 (link). Total protein (100 μg/well) was firstly separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and then immunobloted to the nitrocellulose membranes according to the instructions given by the manufacturer (Bio-Rad, Hercules, CA, USA). The nitrocellulose membranes were blocked with 5% non-fat dry milk in TBST buffer (10 mmol/l Tris-HCl, 0.15 mol/l NaCl and 0.05% Tween 20, pH 7.2) for 1 h and then incubated with antibodies against LC3 (Sigma), Beclin-1 (Abcam, Cambridge, UK); phosphorylated p65 (Abcam), p52(Cell Signaling), and IL-1β (Santa Cruz Biotechnology), respectively, at 4oC overnight, washed and then incubated with the corresponding goat anti-rabbit or anti-mouse IgG conjugated to horseradish peroxidase (Santa Cruz Biotechnology) in 1:3,000-5,000 (in PBST) for 60 min. Protein bands were developed and detected using the ECL Super Signal reagent (Pierce, Rockford, IL, USA). Relative band densities of the indicated target proteins were measured from scanned films using NIH ImageJ Software.
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2

Lung Tissue Protein and Signaling Analysis

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To identify the proteins and signaling pathways within the lung tissue, the right lung was homogenized with a tissue lysis/extraction reagent (Sigma-Aldrich). The total protein content of each sample was determined by using the Bradford assay (Bio-Rad Laboratories, Hercules, CA, USA). A total of 30 μg protein was electrophoresed by using 10% SDS-polyacrylamide gel and then transferred to a polyvinyl difluoride membrane. The membrane was blocked with 5% skim milk for 1 h and incubated overnight at 4 °C with the following primary antibodies: p-65 (diluted 1:1000, Abcam), phosphorylated-p65 (diluted 1:1000, Abcam), iNOS (diluted 1:1000, Abcam), HO-1 (diluted 1:1000, Cell Signaling, Beverly, MA, USA), Nrf2 (diluted 1:1000, Cell Signaling), β-actin (diluted 1:1000, Cell Signaling), lamine B1 (diluted 1:1000, Abcam). After washing three times with tris-buffered saline (TBS) that was supplemented with Tween 20, the horseradish peroxidase (HRP)-conjugated secondary antibody was diluted to 1:3000 and incubated for 1 h. Membranes were washed again, and binding was detected by using an enhanced chemiluminescence kit (Thermo-Scientific, Waltham, MA, USA). The density of each protein band was evaluated by using ChemiDoc (Bio-Rad Laboratories, Hercules, CA, USA).
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3

Cellular Responses to Iron Compounds

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Ferric sulfate and ferrous sulfate heptahydrate were purchased from Energy Chemical Technology Co., Ltd. (Shanghai, China). Ferric citrate was purchased from Sigma‐Aldrich (St. Louis, MO). Fetal bovine serum (FBS) was purchased from Invitrogen (Carlsbad, CA). Dulbecco's Modified Eagle's Medium (DMEM) was obtained from Sigma (Yuzhong District, Chongqing, China). Antibodies against p21 and C646, a p300/CREB‐binding protein (CBP) inhibitor, were purchased from Abcam Trading Co. Ltd. (Shanghai, China). N‐acetyl‐l‐cysteine (NAC), dihydroethidium (DHE), and a ROS Detection Kit were purchased from Beyotime Company (Jiangsu, China). Prussian Blue staining solution was acquired from Leagene Biological Technology Co. Ltd. (Beijing, China). Antibodies against p53, acetylated p53, CD86, and CD206 were from Cell Signaling Technology (Danvers, MA), and IL‐1, IL‐10, TGF‐β, and TNF‐α were purchased from GeneTex (San Antonio, TX). p21, p300, CBP, p65, phosphorylated p65, and glyceraldehyde 3‐phosphate dehydrogenase (GAPDH) were purchased from Abcam (Cambridge, MA). FITC‐CD86 and APC‐CD206 were purchased from Thermo Fisher Scientific (Waltham, MA).
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