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16 protocols using bz 8100 microscope

1

Oil Red O Staining of BAT Specimens

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BAT specimens were fixed with 4% paraformaldehyde, rinsed with water, transferred into 30% sucrose in PBS at 4 °C until specimens sunk, and embedded in Optimal Cutting Temperature (OCT) matrix compound. OTC-embedded specimens were cut into 4 µm-thick sections and stained for 60 min at 37 °C in Oil red O solution followed by counterstaining with hematoxylin and eosin. Oil red O staining was carried out by Biopathology Institute Co., Ltd. (Oita, Japan). Microscopic examinations were performed using a BZ-8100 microscope (Keyence, Osaka, Japan).
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2

Histological Analysis of WAT and Liver

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Histological examination of WAT and liver was carried out under standardized methods. The tissues were dissected, fixed in 10% buffered formalin overnight, washed with PBS, and embedded in paraffin. Sections were stained with hematoxylin and eosin for histological analysis, and the slides were examined under a Keyence BZ-8100 microscope (Keyence Japan, Osaka, Japan).
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3

Immunostaining Protocol for Cardiomyocyte Differentiation

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Cardiomyocyte differentiation was performed in 96-well plates. Cells were rinsed with 100 μL of phosphate-buffered saline (PBS) containing 0.5 mM CaCl2 and 0.5 mM MgCl2 (PBS+/+) and fixed for 20 min with 100 μL of 4% paraformaldehyde. The cells were rinsed with 100 μL of PBS+/+, permeabilized with 100 μL of PBS+/+ containing 0.2% Triton X-100 (020-81152, Kishida Chemical), blocked for 60 min with 10 mg/mL bovine serum albumin (BSA, A8806-1G, Sigma-Aldrich), and incubated overnight with primary antibodies (25 μL) in an immunostaining buffer at 4 °C with shaking. The cells were then incubated with secondary antibodies in an immunostaining buffer for 1 h at 23–28 °C with shaking. The primary and secondary antibodies were used after dilution in the immunostaining buffer. Nuclei were stained with 20 µg/mL 4’,6-diamidino-2-phenylindole dihydrochloride (DAPI,045-30361, Wako). The cells were then imaged using a BZ-8100 microscope (Keyence) and analyzed with Image J software (NIH, Bethesda). The antibody information is listed in Table S3.
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4

Evaluating miR-140 Effects on CRC Cell Migration

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A scratch-wound assay was performed to evaluate the effect of miR-140 on CRC cell migration. The CRC cells (3 × 105 cells/well) in six-well plates were transfected with miRNAs, miRNA inhibitors, or siRNAs and cultured until reaching confluence. A 10 μl pipette tip was used to scrape the monolayer cells for generating a scratch wound. The wounded surface was washed with 1 × phosphate-buffered saline (PBS) to remove the cell debris and thereafter cultured in the serum-free medium. At 72 h after scrape, the wound closures were photographed with a BZ-8100 microscope (Keyence, Japan).
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5

Immunofluorescence Staining of hiPSCs

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The hiPSCs were fixed with 4% paraformaldehyde for 20 min. The cells were permeabilized and blocked with PBS containing 0.2% Triton X-100 and 10 mg/mL bovine serum albumin for 60 min. Primary and secondary antibody information is listed (S2 Table). Nuclei were stained with 0.4 μM DAPI (Wako Pure Chemical Inc.). Micrographs were obtained using a BZ-8100 microscope (Keyence, Osaka, Japan).
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6

In Vitro Invasion Assays for Glioblastoma

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Two in vitro invasion assays were performed. Patient-derived GBM cells were seeded into 96-well Costar ultra-low attachment plates (Corning Inc., Corning, NY, USA) at 1.0 × 103 cells/well in 25 μl of medium. The plates were briefly centrifuged to allow formation of central spheroids, and growth factor-reduced Matrigel was then added to each well (25 μg/insert; Becton Dickinson, Franklin Lakes, NJ, USA). Digital images of the spheroid midplanes were acquired with a BZ-8100 microscope (Keyence, Osaka, Japan). After incubation, the radius of invasion was defined as the distance farthest from the spheroid edge and was calculated using ImageJ software (http://rsb.info.nih.gov/ij/), as previously described [35 (link), 44 (link)]. The second assay was performed using Corning BioCoat Matrigel® Invasion Chambers (24-well format; Corning Inc.) as previously described [25 (link)]. Each chamber was randomly counted at five high-power fields to determine the mean number of invaded cells.
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7

Immunostaining and Flow Cytometry for ESCs

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For immunostaining, the ESCs were fixed in 10% formaldehyde, permeabilized with 0.1% Triton X-100, blocked with 1% BSA, and then stained with an anti-Oct3/4 antibody (rabbit polyclonal IgG 1:100; Santa Cruz Biotechnology, Dallas, TX) or an anti-FGF5 antibody (rabbit polyclonal IgG 1:100; Santa Cruz Biotechnology) as primary antibodies. Primary antibody binding was visualized using AlexaFluor 546-conjugated anti-rabbit polyclonal IgG (1:2,000; Invitrogen, Carlsbad, CA). Nuclei were stained with 0.4 μM 4′,6-diamidino-2-phenylindole (DAPI; Wako Pure Chemical Industries, Osaka, Japan). Micrographs were obtained using a BZ-8100 microscope (Keyence, Osaka, Japan).
For flow cytometry analysis, all cells were removed from culture dishes using 0.02% (w/v) EDTA-4Na in PBS, and then 0.1 μg/mL propidium iodide (PI; Wako Pure Chemical Industries) was added to aid identification of dead cells. A JSAN flow cytometer (Bay Bioscience Co., Kobe, Japan) was used for data acquisition.
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8

Visualizing S1P Receptor Dynamics

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S1PR-expressing C6 cells were acutely stimulated with 1 μM S1P or ponesimod for 1 hr to test short-term effects. For wash-out effect experiments, cells were stimulated with 1 μM S1P, ponesimod, or fingolimod-P for 4 hrs, followed by washing out the compounds, medium replacement to 0.1% BSA-DMEM, and incubation for 18 hrs. Cells were then stained with primary (anti-HA antibody, clone 3F10; Millipore Sigma, Burlington, MA; Cat #12158167001) and secondary Abs (phycoerythrin-labeled anti-rat IgG secondary Ab; BioLegend, San Diego, CA; Cat #405406), followed by flow cytometry (FCM) analyses using a Novocyte flow cytometer (Agilent, Santa Clara, CA). Human primary astrocytes were transfected with pcDNA3.1 harboring a S1P1-EGFP fusion construct by Lipofectamine 2000 (Thermo Fisher Scientific, Cat #11668030) and cultured overnight. Cells were stimulated with 1 μM ponesimod or fingolimod-P for 1 hr and fixed with 2% paraformaldehyde. Cells were imaged using a Keyence BZ-8100 microscope (Osaka, Japan).
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9

Lipid Quantification in Adipocytes

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ASCs and NIH3T3-L1 cells were treated with 4% paraformaldehyde and 60% 2-propanol and then stained with Oil Red O (Sigma). The stained cells were observed under a BZ-8100 microscope (Keyence) and the quantity of Oil Red O-extracted from cells was determined by measuring absorbance at 550 nm using the infinite TM M200 (TECAN).
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10

S1P Receptor Modulation in Astrocytes

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S1PR‐expressing C6 cells were acutely stimulated with 1 µM S1P or ponesimod for 1 h to test short‐term effects. For wash‐out effect experiments, cells were stimulated with 1 µM S1P, ponesimod, or fingolimod‐P for 4 h, followed by washing out the compounds, medium replacement to 0.1% BSA‐DMEM, and incubation for 18 h. Cells were then stained with primary (anti‐HA antibody, clone 3F10; Millipore Sigma, Burlington, MA; Cat #12158167001) and secondary Abs (phycoerythrin‐labeled anti‐rat IgG secondary Ab; BioLegend, San Diego, CA; Cat #405406), followed by flow cytometry (FCM) analyses using a Novocyte flow cytometer (Agilent, Santa Clara, CA). Human primary astrocytes were transfected with pcDNA3.1 harboring a S1P1‐EGFP fusion construct by Lipofectamine 2000 (Thermo Fisher Scientific, Cat #11668030) and cultured overnight. Cells were stimulated with 1 µM ponesimod or fingolimod‐P for 1 h and fixed with 2% paraformaldehyde. Cells were imaged using a Keyence BZ‐8100 microscope (Osaka, Japan).
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