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9 protocols using silica gel 60 f254 aluminium plates

1

Soxhlet Extraction and Chromatographic Fractionation

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Two separate Soxhlet extractions of 40.95 g and 41.36 g of plant material were carried out with 500 mL of ethanol each for 24 h. The native extracts were evaporated to dryness on a rotary evaporator (Büchi R-100, Büchi, Flawil, St. Gallen, Switzerland). A total of 2.63 g of dry extract yielded from the first Soxhlet extraction were separated by open-column chromatography on 25 g of silica (40–63 µm, VWR) with hexane, ethyl acetate and methanol in solvent systems of rising polarity, leading to 67 fractions.
TLC analyses of fractions were carried out on Silica Gel 60 F254 aluminium plates (Merck, Darmstadt, Hessen, Germany) with mobile phase systems hexane/ethyl acetate/methanol = 75/20/5 (v/v) for apolar fractions and hexane/ethyl acetate/methanol = 60/20/20 (v/v) for polar fractions. The staining reagent consisted of 0.5 mL of 4-anisaldehyde, 10 mL of acetic acid (both Carl Roth), 85 mL of methanol and 5 mL of sulfuric acid (Carl Roth). After spraying, the plates were heated at 105 °C for 5 min.
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2

Synthesis and Characterization of Organic Compounds

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All solvents were purified and dried using standard methods prior to use. Commercially available reagents were used without further purification. All reactions involving air- or moisture-sensitive compounds were performed under a nitrogen atmosphere using dried glassware and syringe techniques to transfer solutions. Analytical thin-layer chromatography (TLC) was carried out on Merck silica gel 60 F-254 aluminium plates. Melting points were determined on Stuart digital melting-point apparatus/SMP 30 in open capillary tubes and uncorrected. Nuclear magnetic resonance (1H-NMR, 13 C-NMR) spectra were recorded using an Avance Bruker 500 MHz, 125 MHz spectrometer in DMSO-d6. Chemical shifts reported in parts per million (ppm) with TMS as an internal reference, and the coupling constants (J) expressed in hertz (Hz). Splitting patterns are denoted as follows: s, singlet; d, doublet; t, triplet; m, multiplet; dd, doublet of doublet. HRMS were determined with Agilent QTOF mass spectrometer 6540 series instrument and were performed in the ESI techniques at 70 eV.
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3

Spectroscopic Analysis of Organic Compounds

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All the chemicals and solvents were procured and utilised as such from the suppliers. Wherever necessary, anhydrous solvents were used. Thin layer chromatography (TLC) analysis was done by utilising Merck silica gel 60 F254 aluminium plates. Stuart digital melting point apparatus (SMP 30) was used in determining the melting points of the compounds, which are uncorrected. 1H and 13C NMR spectra were recorded using Bruker Avance 500 MHz and 125 MHz respectively using DMSO-d6 as the solvent. Chemical shift values are recorded in ppm using TMS as the internal standard. HRMS were determined by Agilent QTOF mass spectrometer 6540 series instrument and were performed using ESI techniques at 70 eV.
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4

Bioautography of Syzygium malaccense Extracts

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Bioautography of Syzygium malaccense leaf methanolic extract against Streptococcus pyogenes, Streptococcus pyogenes and Staphylococcus aureus enabled the activity-guided isolation of antibacterial compounds. TLC was carried out on silica gel 60 F254 aluminium plates (Merck) submitted to Tol/AcOEt/MeOH (7:2:1; v/v) eluent with UV detection 254 and 366 nm. The plates were covered by MHA containing the bacterial strain suspension in Petri dishes. After incubation (24 h at 37 °C), growth was revealed by iodonitrotetrazolium chloride (INT, 2 mg/mL) and inhibition zones were visually localized on the TLC.
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5

Identification of Camptothecin in Endophytic Extracts

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Presence of camptothecin in the endophytic extracts can also be identified using TLC. TLC was performed using silica gel 60 F254 aluminium plates (Merck, Germany). Extracts of camptothecin (10 µl) from selected endophytes were spotted on the TLC plate with the standard camptothecin sample used as positive control. Chloroform–methanol (20:1) solvent system was used as the mobile phase. The plates were placed in the mobile phase in a pre-saturated chamber and the samples were allowed to be drawn upward on the TLC plates via capillary action for the separation of the sample components. As camptothecin is known to exhibit fluorescence under UV light, the TLC plates were dried and visualized at 254 nm in a UV chamber as per the protocol reported elsewhere26 (link),27 (link).
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6

Synthesis and Characterization of Organic Compounds

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All chemical reagents and solvents were obtained from commercial suppliers (Sigma-Aldrich (St. Louis, MO, USA), TCI-Europe (Zwijdrecht, Belgium) and Merck (Darmstadt, Germany)). The purity of the compounds was checked by TLC (silica gel 60 F254 aluminium plates (Merck, Darmstadt, Germany)) and visualized by UV light. The flash column chromatography was performed by silica gel Wakogel C-200 (Wako Chemical, Osaka, Japan). The melting points were defined in open capillaries by using MEL-TEMP equipment (Barnstead Thermolyne Corp, Dubuque, IA, USA). UV-VIS spectra were obtained by Lambda 25 UV-VIS (Perkin-Elmer, Waltham, MA, USA) spectrophotometer. IR spectra were recorded in KBr on a Perkin-Elmer spectrophotometer (FT-IR Spectrum BX II). NMR spectra were obtained with Bruker spectrometer (1H - 400 MHz and 13C - 100 MHz) in d-chloroform or d6-DMSO by using residual solvent signal as an internal standard. HRMS spectra were recorded by Dual-ESI Q-TOF 6520 (Agilent Technologies, Santa Clara, CA, USA) mass spectrometer.
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7

Soxhlet Extraction and Chromatographic Fractionation

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Two separate Soxhlet extractions of 40.95 g and 41.36 g of plant material were carried out with 500 mL of ethanol each for 24 h. The native extracts were evaporated to dryness on a rotary evaporator (Büchi R-100, Büchi, Flawil, St. Gallen, Switzerland). A total of 2.63 g of dry extract yielded from the first Soxhlet extraction were separated by open-column chromatography on 25 g of silica (40–63 µm, VWR) with hexane, ethyl acetate and methanol in solvent systems of rising polarity, leading to 67 fractions.
TLC analyses of fractions were carried out on Silica Gel 60 F254 aluminium plates (Merck, Darmstadt, Hessen, Germany) with mobile phase systems hexane/ethyl acetate/methanol = 75/20/5 (v/v) for apolar fractions and hexane/ethyl acetate/methanol = 60/20/20 (v/v) for polar fractions. The staining reagent consisted of 0.5 mL of 4-anisaldehyde, 10 mL of acetic acid (both Carl Roth), 85 mL of methanol and 5 mL of sulfuric acid (Carl Roth). After spraying, the plates were heated at 105 °C for 5 min.
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8

Analytical Reagents and Thin Layer Chromatography

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All solvents were analytical, spectroscopic or HPLC grade such as acetone analytical reagent (AR) grade, methanol AR grade, methanol HPLC grade, dichloromethane AR grade and hexane AR grade, formic acid, sulphuric acid reagent grade, glacial acetic acid, p-anisaldehyde, dimethyl sulfoxide (DMSO) and obtained from Merck (Darmstadt, Germany and Australia). Silica-gel 60 F254 aluminium plates (Merck, Germany), were used for thin layer chromatography (TLC) to detect compounds of interest. For visualisation of separated compounds on TLC-plates, anisaldehyde spray reagent was freshly prepared (0.5% v/v p-anisaldehyde in 5% v/v sulphuric acid, 5% v/v glacial acetic acid in ethanol) and used.
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9

TLC and NMR Characterization of Compounds

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All reactions were monitored using TLC, performed with E. Merck silica gel 60 F254 aluminium plates (Kenilworth, NJ, USA) and were visualized under UV light. The following mobile phases were employed for TLC: chloroform, methanol, hexane and ethyl acetate in different ratios. 1 H NMR (400 MHz) spectra was recorded in DMSO-d6 solutions on a 400 MHz and 100 MHz spectrometer. Chemical shifts are reported in δ (ppm) relative to TMS as internal standard; coupling constants (J) are expressed in Hz.
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