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14 protocols using enterobactin

1

Biochemical Activity of Enterobactin Biosynthesis

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The biochemical activity of enterobactin biosynthesis was monitored by HPLC. [18 (link)] Briefly, 10 μM EntE and 10 μM EntB were added to 75 mM EPPS pH 8.0, 0.2 mM TCEP, 10 mM MgCl2, 10 mM ATP, 1.5 mM L-serine (10 mM for L958D), and 1.0 mM 2,3-dihydroxybenzoic acid (DHB) and incubated at 37° C for 10 minutes. At the same time, EntF and YbdZ were incubated together at 37° C. The reaction was initiated with the addition of the EntF/YbdZ to the reaction. 100 μL of the reaction was quenched at 0.5 to 5 minutes with 150 μL of 1 N HCl. enterobactin and intermediates were extracted with ethyl acetate. After evaporating the ethyl acetate, enterobactin was resuspended in 250 μL of 30% acetonitrile and run on a Zorbax Eclipse Plus C-18 column (4.6 × 100 mm, 3.5 μm). enterobactin and intermediates were eluted using a 12 minute 10% to 50% acetonitrile gradient. The migration of DHB, the DHB-Ser monomer, dimer, trimer, and cyclized enterobactin were detected via UV absorption at 254 nm. enterobactin (Sigma-Aldrich) was used to produce a standard curve for quantification of enterobactin for each EntF construct.
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2

B. cereus Growth under Iron Restriction

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B. cereus strains were grown overnight at 37°C under low iron conditions by inoculating strains in LB medium supplemented with 200 µM 2,2′-dipyridyl. Overnight cultures were inoculated into a new LB medium +200 µM 2,2′-dipyridyl at a final OD of 0.01. Bacteria from mid-log phase culture were washed twice in LB medium containing 600 µM 2,2′-dipyridyl, then inoculated to a final optical density (OD) of about 0.005 into LB medium or LB+600 µM 2,2′-dipyridyl +0.3 µM HoSF supplemented or not with 5 µM Enterobactin (Sigma-Aldrich). Stock solution of ferritin was prechelated in 2 mM 2,2′-dipyridyl for two hours in order to eliminate the free iron. B. cereus cells were grown at 37°C in 96-wells microtiter plate under continuous shaking. The OD was measured at 600 nm every hour over 16 hours using a TECAN Infinite M200 Microplate Reader (TECAN Group). The assays were repeated at least three times.
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3

Preparation of Siderophore-Iron Complexes

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The iron-free siderophores enterobactin (Sigma-Aldrich) and salmochelin S4 (Genaxxon bioscience) were dissolved in dimethyl sulfoxide (DMSO) at the concentration of 2 mmol/L. The siderophores were filter-sterilized using 0.22 μm cellulose membrane (RPI Research Product International). Sterile 1 mmol/L ammonium Fe(III) citrate (Sigma-Aldrich) was incubated with the iron-free siderophores at 1:1 (v/v) overnight at 4 ºC to obtain a 1 mmol/L siderophore stock solution at 50% saturation.
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4

Campylobacter Ferric Enterobactin Growth Assay

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As previous studies demonstrated that Campylobacter used ferric enterobactin as the sole source of iron during growth promotion assays (56 (link)), we measured the growth of C. jejuni strains as previously described (57 (link)). Briefly, a culture grown overnight on MH agar was resuspended in MH broth to an OD600 of 0.1. C. jejuni cells were grown in a disposable glass tube to log phase. Deferoxamine mesylate salt (DFO) (Sigma-Aldrich, MO, USA), a chelator, was added to melted MH agar at a final concentration of 20 μM. The cells were mixed with DFO-containing MH agar and adjusted to approximately 107 CFU/mL. Each sample mixture was poured into petri dishes for solidification. A sterile disk containing 25 μL of enterobactin (2 mM) (Sigma-Aldrich, MO, USA) was placed on the surface of the agar in each dish. Autoclaved distilled water was used instead of enterobactin as a negative control.
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5

Siderophore Acquisition Compounds

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Desferrioxamine, ferrichrome, enterobactin and DTPA were purchased from Sigma-Aldrich (St. Louis, MO). EDDHA was obtained from the Complete Green Co., El Secundo, CA. Hemin was purchased from Frontier Scientific (Newark DE). Albomycin was obtained from EMC Microcollections (Tübingen, Germany).
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6

Siderophore Detection Assay

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An overnight culture of the indicator strain ΔentA (1 ml) was pelleted by centrifugation, washed twice with PBS, and resuspended in an equivalent volume of PBS. Melted LB agar containing 200 μM 2,2′-dipyridyl (DIP) was cooled to 55°C, inoculated with 25 μl of the ΔentA mutant, and used to pour plates. After agar plate solidification, agar plugs were removed from the plate using the wide end of a 200-μl pipette tip to create test wells. The resulting plates were used to detect the presence of siderophores in the siderophore extracts from the conditioned medium. Test wells were filled with 50 μl of extracts from the conditioned medium, and plates were incubated at 37°C. Positive (2.5 μM enterobactin [Sigma]) and negative (double-distilled water [ddH2O]) controls were included in each experiment. The ΔentA indicator strain cannot grow in the presence of the iron chelator DIP unless exogenous siderophores are present in the extracts added to the test well. The presence of a halo of growth around a test well indicated the presence of siderophores in the extract added to the given test well.
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7

Enterobactin Rescues Oxidative Stress Susceptibility

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An overnight culture of the ΔmacAB mutant grown in LB broth was diluted 1/100 in fresh medium supplemented with 1 mM H2O2. Enterobactin (Sigma), Ent-TRI, Ent-DIM, and Ent-MONO (all from EMC Microcollections, Germany) were added to individual tubes at 2.5 μM and incubated at 37°C with aeration. A separate tube containing the ΔmacAB mutant-inoculated LB broth supplemented with 1 mM H2O2 was incubated under the same conditions and served as a positive control. Aliquots were collected hourly, serially diluted, and plated on LB agar supplemented with chloramphenicol. Results were expressed as percent survival calculated as [CFU(tn)/CFU(t0)] * 100 over time. Each experiment was performed on at least three separate occasions.
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8

Quantifying Catecholate Siderophores

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The presence of siderophore in the medium extracts was measured using Arnow assay (43 ). Fifty-microliter volumes of extract (from wild-type-conditioned and ΔmacAB mutant-conditioned media) were mixed with an equal volume of 0.5 N HCl, followed by addition of nitrite-molybdate reagent (10 g sodium nitrate and 10 g sodium molybdate in 100 ml of H2O) and 1 N NaOH. In the presence of catecholate siderophores, this solution appears pink and has an absorption maximum at 510 nm. The concentration of siderophores in the extracts was calculated based on a calibration curve using enterobactin (Sigma) in a range from 0 to 100 μM.
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9

Siderophore Acquisition Assay

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Enterobactin, ferrioxamine E, and ferrichrome were purchased from Sigma-Aldrich, and bacillibactin was purchased from EMC Microcollections GmbH (Tuebingen, Germany).
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10

Siderophore Uptake Assay Protocol

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Enterobactin (ENT) and ferrichrome (FERRI) were obtained from Sigma-Aldrich. Albomycin δ2 (ALBO) was purchased from EMC Microcollection. Pyoverdine (PVD) was purified from P. aeruginosa PAO1 cultures as previously described [28 ]. TCV was synthesized according to a previously published protocol [29 (link)] and TCVL6 was synthesized as described in Supporting information. The protonophore CCCP (carbonyl cyanide m-chlorophenylhydrazone) was purchased from Sigma-Aldrich. 55FeCl3 was obtained from Perkin Elmer Life and Analytical Sciences (Billerica, MA, USA), at a concentration of 71.1 mM, with a specific activity of 10.18 Ci/g. RPMI was purchased from Thermo-Fisher.
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