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Neon r buffer

Manufactured by Thermo Fisher Scientific

Neon R buffer is a laboratory buffer solution designed for use in various molecular biology and biochemistry applications. It is a key component in maintaining the stability and optimal performance of biomolecules during experimental procedures.

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2 protocols using neon r buffer

1

CRISPR-Mediated CENP-F Mutant Cell Line

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To generate CENP-F mutant cells, CRISPR/Cas9 was used to target the Miro-binding domain of CENP-F (guide RNA target sequence GGGATGTCAGCAAACCCTAAGGG). To prepare the guide RNA, a double-strand DNA template was PCR-assembled using two partially overlapping oligonucleotides (15 and 16, Table 2). The resulting DNA contains a minimal T7 promoter sequence, an invariant Cas9-scaffold sequence, and the CENP-F target sequence. DNA was transcribed in vitro using a MEGAshortscript T7 Transcription Kit and cleaned using a MEGAclear Transcription Clean-Up Kit. Cas9 RNPs were assembled by incubating 120 pmol of Cas9 protein (a kind gift from Martin Jinek, University of Zurich) with 100 pmol of guide RNA in 15 μl of Neon R buffer (Neon electroporation system, Invitrogen) at room temperature for 15 min. We harvested 200,000 cells and resuspended them in 5 μl of Neon R buffer. Cas9 ribonuclear proteins were added to the cells, and the mixture was electroporated using 10-μl Neon tips. Electroporation parameters were set to 1400 V, 15 ms and four pulses. Three days after electroporation, cells were single-cloned and further expanded. The targeted CENP-F locus was sequenced to check for mutation.
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2

CRISPR-Cas9 Editing of CENP-F

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CENP-F was targeted using electroporation (Neon system, Invitrogen) of Cas9 RNPs and DNA template for homologous recombination (also see Fig 2 for strategy details). Briefly, ~200.000 cells were harvested, washed with PBS and resuspended in 5 μl of Neon R buffer (Invitrogen). Shortly before electroporation, Cas9 RNP mix (100 pmol of Cas9 (NLS-Cas9, a kind gift from Martin Jinek, University of Zurich), 120 pmol of sgRNA and 200 pmol of single stranded donor DNA template (10, Table 2) in total volume of 5 μl of Neon R buffer) was added to the cell suspension and electroporation was performed using 10 μl Neon tips with electroporation parameters set to 1400V, 15 ms, and 4 pulses. Immediately after electroporation, cells were seeded into 0.5 ml of pre-warmed growth medium and grown for 3 days. Cells were then single-cloned and colonies arising from single clones were used for PCR amplification of the targeted CENP-F locus using primers 12+13. The resulting PCR product was sequenced using primer 12 or digested by TseI to screen for the intended modification (Fig 2B). Clones containing homozygous F2989A mutations in CENP-F were collected for further analysis.
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