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9 protocols using hcs lipidtox red

1

Visualizing Lipid Droplet Dynamics in A431 Cells

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A431 cells, seeded onto glass-bottom dishes (Nunc LabTek 4-well chambered coverglass), were first labeled with 50 μg/ml Alexa Fluor 647-dextran (10,000 MW; Thermo Scientific) supplemented with 200 μM oleic acid/BSA in 5% LPDS to label late endosomal organelles and to induce LDs. The cells were then pulse-labeled for 2 h with 50 μg/ml BC LN-LDL in serum-free DMEM. During the last 30 min of LDL labeling, HCS LipidTox Red or HCS LipidTox Deep Red (1:1000; Thermo Scientific) was added to the medium to label LDs. The cells were then washed and chased in serum-free CO2-independent medium (Gibco) for the indicated times and imaged by live-cell confocal microscopy. Imaging was performed on a Leica TCS SP8 X attached to a motorized DMi8 inverted microscope with ×63 HC PL APO CS2 water objective (1.20 NA). Experiments were performed at 37 °C in CO2-independent medium (Gibco) supplemented with HCS LipidTox Red/Deep Red (1:1000) in a fully enclosed temperature-controlled environmental chamber. Data were acquired with Leica LAS X (Leica Microsystems). The fraction of BC residing in dextran-positive LEs and LipidTox-positive LDs was quantified from background-subtracted images with ImageJ by using Mander’s overlap coefficient as a measure of colocalization.
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2

Staining mitochondria and lipid droplets

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The mitochondria were stained with 1 μM MitoTracker deep red (M22426, Thermo Fisher Scientific, USA). The LDs were stained with HCS LipidTox red (H34476, Thermo Fisher Scientific, USA) at a dilution of 1/1000. HepG2 cells were grown on coverslips and stimulated with different treatments. The cells were then incubated with the indicated media containing MitoTracker and LipidTox for 30 min at 37°C. The fluorescent images were captured using a confocal microscope equipped with a 63×/1.40 NA oil immersion objective (LSM980, Zeiss, Germany).
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3

Visualizing LD-Mitochondria Contact Points

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HepG2 cells were cultured at 37 °C with 5% CO2 in Dulbecco’s modified Eagle’s medium (DMEM, Gibco, catalog no. c11995500BT) supplemented with 10% fetal bovine serum (FBS, Gibco, catalog no. 16000-044) and 1% penicillin-streptomycin (HyClone, catalog no. 30010). A GFP1-10 sequence was inserted into the N terminal of human PLIN2. The resulting GFP1-10-Plin2 was then inserted into a pCDH-CMV-MCS-EF1-Puro vector. The N terminal of human TOM20 (1-33 aa) was used as a mitochondria targeting sequence. Mito-GFP11 was inserted into a pCDH-CMV-MCS-EF1-Puro vector. Lentivirus was packaged as previously described53 (link). Wildtype HepG2 cells were infected by lentiviruses to stably express mito-GFP11 and GFP1-10-Plin2. The LD–mitochondria contact reporter cells were selected and maintained in DMEM supplemented with 2 μg ml−1 puromycin. Then, the cells were grown on lacey 200 mesh gold EM grids (T10012Au, Beijing XXBR Technology Co., Ltd) overnight to promote adherence and spreading. Mitochondria were stained with 1 μM MitoTracker Deep Red (M22426, Thermo Fisher Scientific) at 37 °C for 30 min. For the validation of the LD–mitochondria contact reporter, LDs were stained with HCS LipidTox red (H34476, Thermo Fisher Scientific) at a dilution of 1:1,000 at 37 °C for 30 min.
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4

Neutral Lipid Staining in Zebrafish

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To label the neutral lipids stored in lipid droplets in tissues other than the intestine and/or in the absence of feeding, fish were stained with either HCS LipidTOX Green (Thermo Fisher Scientific, H34475) or HCS LipidTOX Red (Thermo Fisher Scientific, H34476) neutral lipid stains. Fish were incubated with LipidTOX dyes at 1:5000 dilution in either embryo media (6, 9 dpf) or system water (15, 21 dpf) in six-well dishes (6, 9, 15 dpf) or 10 cm dishes (21 dpf) for a minimum of 2 hr prior to imaging.
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5

Cholesterol and Lipid Visualization in Retinal Cryosections

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For cholesterol staining with Filipin, retinal cryosections were air dried, rinsed in PBS, and permeabilized in 0.5% Triton X-100 for 20 mins at 37°C followed by PBS washes. The sections were then incubated in 60 μg/ml Filipin (Sigma-Aldrich, F9765) for 2 h at room temperature in the dark, followed by PBS washes (PMC4235331) (22 (link)). The sections were counterstained with 5 μM DRAQ5 (Cell Signaling, #4084), washed in PBS, mounted in Prolong Gold Antifade and imaged. For LipidTOX staining, flat mounts were incubated in 1:200 dilution of HCS LipidTOX Red (Thermo Fisher Scientific; H34476) in PBS for 30 min at room temperature (RT) and washed in PBS. Sections were mounted in Prolong Gold Antifade Mountant and imaged.
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6

Quantitative Immunofluorescence Analysis of Neuronal Markers

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Conducted using standard techniques. Immunofluorescence images were acquired on a Leica DMi8 inverted microscope equipped with a HCX PL Fluotar 100X /1.30 oil objective. Images were analyzed using ImageJ (NIH, Wayne Rasband, http://rsb.info.nih.gov/ij/). Cells were grown on glass coverslips coated with poly-d-lysine. Cells were fixed in 10% formalin for 10 minutes, permeabilized with 0.3% Triton X-100 in PBS for 1 hour, and incubated with primary antibody cocktail overnight. Primary antibodies used: MAP2 (ab5392; Abcam), AT-8 (MN1020; Thermo Scientific), MC-1 (Peter Davies lab), LC3b (ab48394; Abcam), p62 (23214; Cell Signaling Technologies), pGSK3b (Ser9) (9336; Cell Signaling Technologies), GSK3b (9832; Cell Signaling Technologies, pAMPK (Thr172) (2535; Cell Signaling Technologies), AMPK (2532; Cell Signaling Technolgies), Tomm20 (ab56783; Abcam), pJNK (Thr183/ Tyr185 (9255; Cell Signaling Technologies), and JNK (9252; Cell Signaling Technologies). Lipid droplets were detected using HCS LipidTox Red following manufacturer’s protocol (H34476; Thermo Scientific).
Sholl analysis was conducted using the SNT plugin (https://imagej.net/plugins/snt/) for ImageJ.
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7

Adipocyte Differentiation Assay

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Sorted CD9high and CD9low APCs from IWAT and PWAT were seeded in 96- and 24-well plates, respectively, in high-glucose DMEM (Gibco) supplemented with 10% FBS, penicillin-streptomycin, gentamicin, sodium pyruvate and MEM non-essential amino acid solution. Once the cells reached confluence, differentiation was induced through the addition of medium containing 3-isobutyl-1-methylxanthine (0.5 mM), dexamethasone (1uM) and insulin (5ug/mL). After 2 days, the medium was changed to medium containing insulin only (5ug/mL). Culture medium was changed every 2 days and replaced with medium containing insulin until the end of the study. On day 7 of culture, cells were washed with PBS and fixed with 4% PFA for 30 min. After washing 3X with PBS, cells were stained with HCS LipidTox Red (Thermo Fisher) and DAPI. Final washes were done with PBS 3X and images were obtained using a NIKON A1R confocal microscope.
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8

Lipid Droplet Visualization in F. graminearum

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F. graminearum PH-1 and the ΔFgatg9-2 mutant were grown in CMC for 3 days to generate conidia. The conidia obtained were collected and cultivated in liquid CM medium with 4×104/ml conidial suspension at 28°C for 2 days. Mycelia were harvested and washed twice with water and inoculated in 1/10 DFM-C for starvation for about 18 h [30 (link)]. Lipid droplets from the mycelia were visualized by staining with HCS LipidTox Red (Invitrogen) at 0 h and 18 h after under starvation.
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9

Antibody Sources and Reagents

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The following antibodies were obtained commercially: anti-core (clone C7-50, Affinity BioReagents), anti-NS5A (clone 2F6/G11, IBT), anti-Flag (F7425, Sigma), anti-ADRP (ab52355, Abcam), anti beta-actin (Sigma), anti-mouse Alexa 488 (Invitrogen), anti-rabbit Alexa 647 (Invitrogen), anti-rabbit-HRP (Jackson Laboratories), anti-mouse-HRP (Jackson Laboratories). Enzymes for molecular cloning were purchased from New England Biolabs, cell culture reagents from Gibco, and fine chemicals, if not noted otherwise, from Sigma. Neutral lipids were stained with HCS LipidTOX Red (H34476, Invitrogen).
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