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6 protocols using phospho stat1

1

Immunoblotting Analysis of IDO and Signaling Proteins

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IDO, phospho-Stat1 (BD Biosciences), Stat1, IRF-1, phospho-p38, p38, PD-L1 (all Cell Signaling Technologies) and GAPDH (Ambion) protein expression was determined by immunoblotting and analyzed by ImageJ software. Anti-IDO mouse monoclonal anti-human IDO antibody, a kind gift of Osamu Takikawa, was used as described [20 (link), 30 (link)]. IDO1 enzymatic activity was determined by measuring tryptophan and kynurenine levels in cell culture supernatants by high-pressure liquid chromatography [20 (link)].
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2

Immunostaining of Transcription Factors

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Experiments were performed in 96-well plates. Cells were washed 1× with warm Dulbecco’s phosphate-buffered saline (PBS) and then fixed with 4% paraformaldehyde in PBS for 15 min at room temperature. Cells were then washed with PBS and permeabilized with 0.5% Triton X-100 in PBS at room temperature for 10 min. Cells were washed, blocked with 3% bovine serum albumin (BSA) in PBS for 30 min, and then incubated in primary antibody in antibody buffer (PBS with 0.3% Triton X-100 and 1% BSA) overnight at 4°C. The next day, cells were washed and incubated with secondary antibodies and Hoechst 33342 (2 μg/ml; Thermo Fisher Scientific #H3570) in antibody buffer for 2 hours at room temperature. After this, cells were washed with PBS and imaged in TBS-T [0.1% Tween 20 in 1× tris-buffered saline (pH 7.4)] on PerkinElmer Operetta High-Content Imaging System (25 fields per well, 20× objective, nonconfocal mode). The following antibodies were used: IRF1 (Cell Signaling Technology #8478), STAT1 (BD Biosciences #610186), and phospho-STAT1 (BD Biosciences #612133).
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3

PBMC Interferon Activation Assay

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Healthy control peripheral blood mononuclear cells (PBMC; 1 × 107/mL) were either left unstimulated or stimulated for 15 min at 37°C with IFNα (10 ng/mL), IFNω (10 ng/mL), or IFNγ (400 U/mL) in the presence of 10% patient or control serum, as previously described (Gupta et al., 2016 (link)). Monocytes were identified by CD14 surface staining (BD Biosciences) before being fixed and permeabilized for intranuclear phospho-STAT1 (Y701; BD Biosciences). Data were collected using an LSRFortessa (BD Biosciences), analyzed using FlowJo software, and graphed with Prism6 software (GraphPad).
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4

Modulation of Macrophage Activation by Glycyrrhizic Acid

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Dulbecco's modified eagle's medium (DMEM), LPS (Escherichia coli 0111:B4), FITC-dextran (40,000 Da), and glycyrrhizic acid (GA) were purchased from Sigma Chemical Co. (St. Louis, MO, USA). There was no detectable endotoxin (<0.10 endotoxin units/mL) in the GA samples, as determined by Endospecy. Recombinant moues IFN-γ, M-CSF, and IL-4 were obtained from PeproTech Inc. (Rocky Hill, NJ, USA). Anti-mouse antibodies FITC-F4/80, -CD80, -CD86, -MR and PE-MHCII, and -CCR7 as well as anti-NF-κB p65 were obtained from Biolegend (San Diego, CA, USA). The ELISA kits for TNF-α, IL-6, IL-10, and IL-12p70 were obtained from eBioscience (San Diego, CA, USA). Antibodies against β-actin, iNOS, phospho-JNK, JNK, phospho-p38 MAPK, p38 MAPK, IκBα, LaminB1, and HRP-conjugated anti-mouse and anti-goat IgG were purchased from Santa Cruz Biotech (Santa Cruz, CA, USA), and phospho-ERK1/2, anti-ERK1/2, phospho-STAT1, and anti-STAT1 antibodies were obtained from BD Pharmingen (San Jose, CA, USA). Inhibitors BAY 11-7082, SP600125, SB203580, and U0126 were purchased from Beyotime Biotechnology (Haimen, Jiangsu, China).
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5

Investigating Schwann Cell Signaling Pathways

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Four cell lines were all purchased from American Type Culture Collection (ATCC, Manassas, VA, USA), including human neuroblastoma BE(2 (link))-C and SH-SY5Y, rat Schwann cell (RSC) RT4-D6P2T, and human Schwann cell (HSC) from ScienCell Research Lab (San Diego, CA, USA). Following the manual, the cell culture medium and related reagents were used, and all were purchased from the cell culture facility at University of California, San Francisco. Recombinant human BDNF was purchased from R&D systems Inc. (Minneapolis, MN, USA) and used for the treatment. S100, p75 antibodies (Chemicon, Inc., Temecula, CA, USA) and secondary antibody FITC-conjugated goat anti-mouse IgG (Chemicon, Inc., Temecula, CA, USA) were used for immunofluorescence staining. Beta-actin, JAK2, phospho-JAK2 (Chemicon, Inc., Temecula, CA, USA), STAT1, phospho-STAT1, STAT3, and phospho-STAT3 (BD Biosciences, CA, USA) antibodies were used for immunoblot. The reagents in ECL kit (Amersham Life Sciences Inc., Arlington Heights, IL, USA) were used as substrate for all the immunoblotting. OSM-M and IL-6 enzyme linked immunosorbent assay (ELISA) kit (R&D systems Inc., Minneapolis, MN, USA) were applied to assay the secretion of cytokine from Schwann cells.
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6

Western Blot Analysis of Phospho-STAT1

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Cells were harvested and lysed with 1× RIPA (150 mM sodium chloride, 1.0% Triton X-100, 0.5% sodium deoxycholate, 0.1% sodium dodecyl sulfate [SDS], 50 mM Tris [pH 8.0]) with phosphatase and protease inhibitors (Sigma-Aldrich) for 5 min at 37°C. Lysates were collected, and equal protein amounts were separated by SDS-PAGE and blotted onto a nitrocellulose membrane by wet blotting (Bio-Rad). Membranes were blocked with TBS-T containing 5% bovine serum albumin (BSA) for 2 h at room temperature. The primary antibodies beta-actin (Sigma #5441) and phospho-STAT1 (BD Transductions, catalog no. 612233) were diluted in the same blocking buffer, followed by incubation overnight at 4°C. Membranes were then washed three times with TBS-T for 10 min at room temperature with rocking. Anti-mouse antibodies coupled with horseradish peroxidase (HRP; GE Healthcare, catalog no. NA934V) were used at a 1:5,000 dilution in blocking buffer, followed by incubation at room temperature for 1 h with rocking. Membranes were washed three times with TBS-T for 10 min at room temperature with rocking. HRP detection reagent (GE Healthcare) was mixed 1:1, followed by incubation at room temperature for 5 min. Membranes were exposed to film and developed.
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