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Ix83 fluorescent microscope

Manufactured by Olympus
Sourced in Japan

The IX83 fluorescent microscope is a versatile research-grade instrument designed for high-performance imaging. It features advanced illumination and detection systems, enabling researchers to capture detailed fluorescent images of biological samples. The IX83 is capable of a range of fluorescent imaging techniques, providing a powerful tool for various scientific applications.

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35 protocols using ix83 fluorescent microscope

1

Visualizing Mitochondrial Dynamics in Cells

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CellLight Mitochondria-RFP or -GFP, BacMam 2.0 were purchased from Invitrogen (Carlsbad, CA, USA). They are fluorescent and the leader sequence of E1 alpha pyruvate dehydrogenase (in mitochondrial matrix) fusions that provide accurate and specific targeting to mitochondria in live-cell mitochondrial imaging. Cells grew on culture dishes to 70% confluence. The appropriate volume of CellLight reagent for the number of cells were calculated as the protocol of the products. The volume of CellLight mitochondria-RFP or -GFP were added to cells. The cells were incubated at 37˚C at least 16 hours and observed by Olympus IX83 fluorescent microscope. Averaged number of mitochondria per fibroblast was determined by Cellsense software. In order to test mitochondrial transfer between adenocarcinoma cell MCF-7 and fibroblasts, mitochondria of MCF-7 and fibroblasts were labelled with CellLight Mitochondria-RFP or -GFP, respectively, for at least 16 hours. The media were removed. Cells were washed twice with prewarmed fresh media and dis-attached with TrypLE express reagent. Same number of MCF-7 and fibroblasts were mixed and co-cultured at 37˚C and 5% CO 2 for 24 hours. The fluorescence in cells was observed by Olympus IX83 fluorescent microscope.
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2

Immunocytochemistry Detection of Epitope-Tagged Proteins

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Cells were fixed with PBS/4% paraformaldehyde for 15 min and then permeabilized with PBS/1% Triton X-100 for 10 min. Cells were washed three times with PBS, then blocked in PBS/10% goat serum for 45 min. Cells were then stained with anti-Flag or anti-HA antibody in PBS for 4 h, before being washed 4 more times (over 15 min). Cells were then stained with secondary antibody (A11037, Thermo Fisher Scientific, Waltham, MA, USA), fluorescently labelled phalloidin (PHDG1-A, Cytoskeleton, Denver, CO, USA) and DAPI (Merck) for 1 h, before 4 final washes (as above). Slides were mounted onto glass coverslips using Fluoroshield (Merck) and viewed on an IX83 fluorescent microscope (Olympus, Shinjuku, Japan), using an Orca R2 CCD camera (Hamamatsu Photonics, Hamamatsu, Japan) and CellSens software (Olympus, Shinjuku, Japan). When performing quantified assays, transfections, immunocytochemistry and microscopy were performed by a researcher who was blinded as to which plasmid was being introduced on each cover slip. This data was decoded only after cells had been viewed and counted.
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3

Immunolabeling of Cryosectioned Spheroids

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Spheroids were first placed in OCT compound, frozen overnight in -80°C, and subsequently cryosectioned. Immunolabeling of spheroid cryo-sections were carried out at room temperature in ambient light conditions. Sections were blocked with 3% BSA containing 10% normal donkey serum for 30 minutes followed by immunolabeling with primary antibodies (S2 Table) in blocking buffer for 45 minutes. After probing with fluorescein labeled appropriate secondary antibodies and nuclei counter stained with DAPI for 45 minutes, sections were mounted. Once completed, the sections were examined using a fluorescence microscope (Olympus IX83 Fluorescent Microscope) as well as a confocal microscope (Olympus FV3000 Confocal Microscope).
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4

Epidermal Sheet Isolation and Staining

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Epidermal sheets were prepared as previously described (Mohammed et al., 2016 (link)). Briefly, epidermal side of shaved defatted flank skin or splitted ear skin was affixed to slides with double-sided adhesive (3M, St. Paul, MN). Slides were incubated in 10 mM EDTA in PBS for 90 min at 37°C, followed by physical removal of the dermis. The epidermal sheets were fixed in 4% PFA at RT for 15 min. The eidermal sheets were blocked with PBS containing 0.1% tween-20, 2% BSA and 2% rat serum or rabbit serum for 1 hour at RT before staining 1hour with antibodies at RT in PBS containing 0.1% tween-20 and 0.5% BSA. The slides were mounted with ProLong™ Gold Antifade Mountant (Thermo). Images were captured on an IX83 fluorescent microscope (Olympus Tokyo, Japan) using a x10 objective; image analysis was performed using cellSens Dimension software (Olympus). For enumeration of cells, three images from distant sites within an epidermal sheet from a mouse were counted (total 3 mm2) manually or automatically in ImageJ64 after image processing by Adobe Photoshop (version 6) and the average number per mm2 epidermis was calculated as representative of the epidermal sheet. Anti-CD45.2 (104), CD8α (53–6.7), Thy1.1 (OX-7), MHCII (M5/114.15.2), hNGFR (ME20.4), YFP (FM264G) were purchased from Biolegend.
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5

Epidermal Isolation and Immune Cell Imaging

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Epidermal sheets were prepared as previously described [25 (link)]. Shaved defatted flank skin was affixed to slides with double-sided adhesive (3M, St. Paul, MN). Slides were incubated in 10 mM EDTA in PBS for 90 min at 37°C, followed by physical removal of the dermis. The epidermal sheets were fixed in 4% PFA at room temperature (RT) for 30 min. The epidermal sheets were blocked with PBS containing 0.1% tween-20, 2% BSA and 2% rat serum for 1 hours at RT before staining overnight with Alexa Fluor 488–conjugated anti–GFP, Alexa Fluor 594–conjugated anti–mouse I-A/I-E and Alexa Fluor 647– conjugated anti-TCR γ/δ antibody in PBS containing 0.1% tween-20 and 0.5% BSA. Images were captured on a IX83 fluorescent microscope (Olympus Tokyo, Japan) using a x10 objective; image analysis was performed using cell Sens Dimension software (Olympus). Both LC and DETC in epidermis were counted either by ImageJ software or manually in a blinded fashion.
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6

IMPDH2-RAC1 Interaction Visualization

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The in situ detection of endogenous protein interaction between IMPDH2 and RAC1 was performed with a Duolink® PLA kit (MilliporeSigma, # DUO92101). MDA-MB-231 cells were seeded in Millicell EZ Slides (MilliporeSigma, # PEZGS0816) with overnight culture and then the cell monolayers were scratched with a p200 pipette tip. 12 h after scratching, the cells were fixed with ice-cold methanol for 10 min for PLA assay which was processed according to the manufacturer’s instruction. Antibodies used in the PLA assay were rabbit polyclonal anti-IMPDH2 antibody (MilliporeSigma, # HPA001400) and mouse monoclonal anti-RAC1 antibody (Proteintech, #66122). The images were captured using an Olympus IX83 fluorescent microscope and image data was analyzed using Fiji software.
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7

Quantification of 53BP1 DNA Damage Foci

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Detection and quantification of 53BP1 foci formation were conducted using immunofluorescence and fluorescence microscopy. For immunofluorescence, PaLung, WI-38 and MEF cells were treated with either 10 Gy of γ-irradiation or 5 µM doxorubicin for 3 h before subjected for analysis at the respective time points. In brief, cells were fixed with 4% formaldehyde (Sigma-Aldrich) and permeablized with 0.2% Triton X-100 (Bio-Rad) followed by staining with anti-53BP1 antibody (sc-22760, Santa Cruz, 1:250), Alexa Fluor 488-conjugated anti-rabbit IgG (Jackson ImmunoResearch, 1:100), and DAPI (Sigma-Aldrich). Imaging of cells was performed using Olympus IX83 fluorescent microscope at 405 nm for DAPI and 488 nm for 53BP1. As for quantification of 53BP1 foci, analysis of cells was carried out using cell image analysis software CelProfilerTM with the speckle counting pipeline65 (link). A minimum of 100 cells was quantified per time point for each treatment condition. Average number of 53BP1 foci per cell was calculated using the equation: average number of 53BP1 foci per cell = (total number of foci)/(total number of cells quantified).
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8

Isolation of Brain Immune Cells

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To isolate immune cells from the brain, two-month and one-year-old mice were perfused using a previously described protocol63 (link), with minor modifications. Briefly, after perfusion with ice-cold PBS, the brains were isolated, dissected, and digested with 13 U/mL Liberase TM and 350 kU/mL DNAse I; the brain homogenates were separated using a Percoll density gradient (30%/37%/70%). Immune cells were collected from the 37%/70% Percoll interphase, left unstained or stained with 300 nM DAPI, CD45-FITC, and CD11b-APC antibodies, and analysed using BD FACSAria™ III cytometer. Unstained samples were also seeded on coverslips, fixed, stained with 300 nM DAPI, and analysed on Olympus IX83 fluorescent microscope (Tokyo, Japan).
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9

Cellular ROS Quantification using DCFDA

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Cellular ROS content was measured using DCFDA (2’-7’-Dichlorodihydrofluorescein diacetate) dye as mentioned previously [40 (link)]. In short 12 h post incubation with MWCNTs. The live cells were stained with 10 μg/mL of the dye in PBS and incubated for 20–25 min, followed by a wash with PBS, and visualization was done under Olympus IX83 fluorescent microscope (Olympus, Japan) aided with cell Sens imaging software at 20× objective magnification. The amount of intracellular ROS was proportional to DCF fluorescence intensity and was quantified using ImageJ software. Relative changes in DCF fluorescence were expressed as fold increases over the control cells.
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10

Detachment of 3T3 Cell Sheets

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3T3 fibro-blasts were seeded onto PNIPAAm/PCL fibers at 630 000 cells per cm2 and allowed to grow for 4 days. Medium was changed every day. Prior to detachment, cell were stained with 5 μM calcein, AM (ThermoFisher) and nuclear stain Hoescht 33342 (ThermoFisher) for 30 minutes. Detachment was initiated by rinsing 5 times over 10-15 minutes with cold (approximately 4 °C) medium to dissolve and remove PNIPAAm. Cell sheets were rinsed from the CellCrown insert with additional medium and imaged on an Olympus IX83 fluorescent microscope.
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