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Opti mem 1x

Manufactured by Thermo Fisher Scientific
Sourced in Italy, United States

Opti-MEM 1X is a modified Eagle's Minimum Essential Medium (MEM) designed for use in cell culture applications. It is a cell culture medium that provides a nutrient-rich environment to support the growth and maintenance of a variety of cell types. Opti-MEM 1X is optimized to reduce the amount of serum required for cell culture, making it suitable for transfection experiments and other applications where reduced serum levels are desired.

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8 protocols using opti mem 1x

1

Poly I:C and PAMer-Cy3 Transfection Assay

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For Poly I:C transfection, four hundred thousand of A549-PB1 cells were seeded in a 12-well plate using Opti-MEM® 1X (Thermo Scientific) and pre-treated with or without 75 μM 526A. After four hours, 100 ng of Poly I:C (Tocris Bioscience) was transfected into the A549-PB1 cells using X-tremeGENE HP DNA transfection (Roche). After six hours, total RNAs were isolated and complementary DNAs were synthesized. Quantitative PCR was performed using Bio-Rad Connect Real-Time PCR System to measure the expression of Interferon Stimulating genes. All data were normalized to L32 (Fig 5A and S11 Fig).
For PAMer-Cy3 transfection, four hundred thousand of A549-PB1 cells were seeded in a 12-well plate using Opti-MEM® 1X (Thermo Scientific) and pre-treated with or without 75 μM 526A. After four hours, 20 μM of Pamer-Cy3 was transfected into the A549-PB1 cells using X-tremeGENE HP DNA transfection (Roche). After twelve hours, cells were washed with PBS and fixed with 0.1%% formaldehyde. Fixed cells were analyzed using a MACSQuant Analyzer (Miltenyi Biotec) to quantify Pamer-Cy3 positive cells (Fig 5B and S11 Fig). Data were further analyzed with FlowJo software.
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2

High-Res Microscopy of Organelle Dynamics

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The cells were split as colonies using ReLeSR and seeded in chambered coverglass for high-resolution microscopy (Thermo Scientific, Nunc™ Lab-Tek™ II Chambered Coverglass #1.5, 155379). Transfection was done one-day post-splitting. Approximately 20 min before transfection, media was replaced with Essential 8 (Gibco, A1517001). The transfection mix was prepared in Opti-MEM 1X (Gibco 31985070) with 0.5 μl of Lipofectamine Stem Reagent (Invitrogen, STEM00001), and 500 ng of total DNA divided as follows: 167 ng of pEIF1a::Transposase (gifted by Dr. Michael Ward), and 333 ng of organelle markers: lysosomes [pEIF1a::LAMP1::mTurquoise], mitochondria [pEIF1a::Cox8(1-26)::eGFP], Golgi [pEIF1a::Sit::OxVenus], peroxisomes [pEIF1a::mOrange2::SKL], endoplasmic reticulum [pEIF1a::Sec61β::mApple] (Twist Technologies). The mix was applied dropwise and cells were incubated for four hours before the media was changed back to StemFlex and supplemented with BODIPY™ 665/676 (80 ng) for the staining of lipids (Invitrogen, B3932). Prior to imaging, a media change was performed.
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3

Hypoxia-Induced HIF-1α Silencing

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Silencing experiments were carried out using a specific small interfering RNA (siRNA) targeting HIF-1α (Silencer®Select Validated siRNA, siRNA ID #s6541) and a control siRNA (Silencer®Select Negative Control #1siRNA Cat. n° 4390843), purchased from Ambion as previously described [26 (link)]. Briefly, cells were seeded in a 6-well plate (Sarstedt) at a concentration of 2 × 106 cells/well in RPMI 1640 without antibiotics, then transfection of 46 nM siRNAs was performed by using lipofectamine RNAi MAX (Invitrogen) diluted in OPTI-MEM® (1X) (Gibco, Thermo Fisher Scientific) according to the manufacturer’s instructions. Cells were incubated for 24 h at 37 °C under normoxic conditions (20.9% O2 and 5% CO2). Then the growth medium was replaced and supplemented with antibiotics, and cells were transferred for 24 h to hypoxic conditions (2% O2 and 5% CO2) or maintained in a normoxic environment. Silencing efficiency was evaluated by Western Blotting, using HIF-1α primary antibody (BD Biosciences) and β-actin (Sigma-Aldrich). Anti-mouse IgG HRP (Cell signaling) was used as secondary antibody.
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4

Cultivation of Lung Cell Lines

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The human lung adenocarcinoma cells A549 (ATCC® CCL-185™) and NCI-H441 [H441] (ATCC® HTB-174™) were maintained in OptiMEM1X (Gibco, Life Technologies, Monza, Italy) supplemented with 10% FBS (Gibco, Life Technologies, Monza, Italy) and 100 U/100 μg/mL of Pen/Strep (Euroclone, Milano, Italy) at 37 °C and 5% CO2. Human pulmonary microvascular endothelial cell line HPMEC-ST1.6R was received from Dr. Ronald E. Unger (Institute of Pathology, Medical University of Mainz, Johannes Gutenberg University, Mainz, Germany) and cultured in CellBIND Surface coated flasks (Corning, Corning, N.Y., USA ) in M199 medium (Euroclone, Milano, Italy) supplemented with 15% FBS (Gibco, Life Technologies, Monza, Italy), 2 mM Glutamax I (Sigma Aldrich, Milano, Italy), 25 μg/mL sodium heparin (Sigma Aldrich, Milano, Italy), 25 μg/mL endothelial cell growth supplement (Sigma Aldrich, Milano, Italy), and 100 U/100 μg/mL Pen/Strep (Euroclone, Milano, Italy) at 37 °C, 5% CO2.
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5

Cytotoxicity Assay of Saponin Compounds

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SHSY-5Y cells suspended in DMEM/F-12 were plated at a density of 15,000 cells in a 96-well plate. After 24 h, the medium was replaced with 200 µL of OPTI-MEM 1x (Gibco-USA) reduced serum media containing an aged solution with or without SA, Gn Rb1, and DMyr at different ratios (1:1 and 1:10). Then, cells were incubated for 48 h in 5% CO2 at 37 °C. A total of 20 µL of MTT (3-(4, 5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide) (Sigma-Aldrich, St. Louis, MO, USA) (6 mg/mL) in PBS was dispensed into each well, and the plate was incubated at 37 °C for 4.5 h. The MTT-containing medium was removed, and replaced with 100 µL/well of a lysis buffer (15% SDS, 50% N,N-dimethylformamide, pH 4.7) overnight at 37 °C. The absorbance at 590 nm was measured using the Perkin Elmer plate reader (Perkin Elmer, Waltham, MA, USA).
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6

Optimizing Cell Viability Assays

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DMF was obtained from Sigma Aldrich and solubilized in dimethyl sulfoxide (DMSO). Cell culture dishes were from Greiner Bio-One. DMEM cell culture medium, sterile phosphate buffers saline, penicillin, streptomycin, L-glutamic acid, L-glutamine 200 mM (100x), sodium pyruvate 10 mM, and Opti-Mem® (1x) were from Gibco Life Technologies. Cell Titer Blue was from Promega. Lipofectamine® RNAiMAX™ reagent was from Invitrogen by Life Technologies and (S)-4-carboxyphenylglycine from TOCRIS.
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7

Neuronal Transfection Using Lipofectamine

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Chemical transfections of cultured neurons were performed at 37°C with 5% CO2 in NB plus supplements media without P/S. First, 7 μl of Lipofectamine 2000 (LFA2K) (Thermo Fisher Scientific) was added to 100 μl Opti-MEM 1X (GIBCO), and plasmid DNA was added to 50 μl of Opti-MEM (per dish). LFA2K and plasmid DNA were mixed into 1 tube and incubated for 20–30 min at 37°C. For each dish, conditioned media was replaced with antibiotic-free NB and the DNA complexes were added and incubated for 4 hours, when the media was replaced with half conditioned media and half fresh NB plus supplements. Dishes were incubated for 2–3 days, depending on the experiment, to allow for adequate expression of plasmid-encoded fluorescent proteins or shRNAs. For rapid SIM studies, we used 3.5 μg of DNA pDsRedExpress2-N1 (Clontech). For confocal studies of the PSD and spinule dynamics, we used 3.5 μg of p-mRuby-N1 plasmid, a gift from Michael Davidson (Addgene #54581) + 3.5 μg of pCAG_PSD95.FingR-eGFP-CCR5TC, a gift from Don Arnold (Addgene #46295). For Ca2+ transients experiments, we used 3.5 μg p-mRuby-N1 + 3.5 μg pGP-CMV-GCaMP6s, a gift from Douglas Kim, GENIE Project (Addgene #40753). Four μg of p-mRuby-N1 alone was used in the FM dye labeling experiments, and pGFP, a gift from Stephen Mayfield (Addgene #64904), was added at 2 μg per neuronal coverslip for fixed imaging experiments.
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8

Overexpression of PARP in AML Cell Lines

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OCI-AML2 (passage range of p7 to p9) and OCI-AML3 (passage range of p2 to p6) cells were seeded 48 h prior to experiments. On first day of experiment, 200,000 cells were spun down and resuspended in 90 μL of full culture media for each condition on a 96-well plate (Sarstedt). Experiments consisted of pCMV3-untagged Negative Control Vector plasmid (Sino Biological) and PARP cDNA ORF Clone, Human, untagged plasmid (Sino Biological) treatment groups for each cell line with three replicates per treatment group. For each well, 0.1 μg of plasmid DNA (Sino Biological), 0.8 μL of ViaFect reagent (Promega) and 10 μL of Opti-MEM 1x (Gibco) was incubated for 15 min at room temperature. Subsequently, 10 μL of this DNA/reagent mix was added to the 90 μL of cells in each well. The cells were then incubated for 24 h at 37°C, 5% CO2. The next day, cells were transferred to 12 well plates (Sarstedt) with 1 mL culture media per well and incubated for an additional 48 h at 37°C, 5% CO2. Transfected cells were then analyzed by RT-qPCR and Western blot.
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