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16 protocols using glycitin

1

Soybean, Artemisiae and Mori Fermentation

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The reference standards of daidzin, glycitin, genistin, daidzein, glycitein and genistein were all purchased from Sigma−Aldrich (St. Louis, MO, USA)
Liquid chromatography (LC)/MS−grade acetonitrile, formic acid, methanol, and water were purchased from Merck Co. (Darmstadt, Germany).
Soybean, Artemisiae annuae herba and Mori folium used in the fermentation were purchased from YiFeng TCM shop (Nanjing, China) and authenticated by Associate Professor Jianwei Chen (Department of Pharmacy, Nanjing University of Chinese Medicine, Nanjing, Jiangsu, China).
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2

Quantification of Soybean Isoflavones by HPLC

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Approximately 0.5 g of dry soybean seeds was ground, mixed with 10 mL of 80% methanol in distilled water followed by sonication for 20 min, and subsequently incubated at 80°C for 14 hours. The mixture was filtered through a 0.45-μm filter and transferred to 5-mL HPLC vials. Aliquots of this filtrate (20 μL) were utilized for HPLC analysis.
For HPLC, a Phenomenex C18 column (Shimadzu LC-20A, Japan, 250 mm × 4.6 mm, 5.0 μm) and binary gradient elution were used with solvent A (methanol, chromatography purity) and solvent B (distilled water). The ratio of solvent A was 15%–45% at 0–20 min, 45%–60% at 20–30 min, 60%–80% at 30–35 min, 80%–90% at 35–40 min, and 90%–15% at 40–45 min at a flow rate of 1 mL·min−1. The temperature of the column was maintained at 40°C and the detector wavelength was set at 254 nm. Isoflavones were identified by comparison with authentic standards of daidzein, genistein, daidzin, genistin and glycitin (Sigma, St. Louis, MO, USA), and quantification of the isoflavones was carried out by reference to an external standard.
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3

Antioxidant and Isoflavone Analysis Protocol

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The LB broth and agar media were purchased from Difco (Becton Dickinson Co., Spark, MD, USA). In order to measure the antioxidants and the enzyme activities, the reagents 2,2-diphenyl-1-picrydrazyl (DPPH), 2,4,6-azino-bis (3-ethylbenzthiazoline-6-sulfonic acid) (ABTS) and 2,4,5-tri(2-pyridyl)-1,3,5-triazine (TPTZ) were purchased from Sigma-Aldrich Co. (St, Louis, MO, USA). Chemicals for measuring TP and TF contents (such as the Folin-Ciocalteu’s reagent and diethylene glycol) were also purchased from Sigma-Aldrich. Amongst the twelve isoflavone standards, daidzin, glycitin, genistin, daidzein, glycitein, genistein, malonyldaidzin, malonylglycitin, malonylgenistin, acetyldadzin, acetylglycitin, and acetyldaidzin were purchased from Sigma-Aldrich and the LC Laboratories (Woburn, MA, USA). For the analysis, the reagents and solvents (such as HPLC-grade water, methanol, acetonitrile, glacial acetic acid, etc.) were purchased from Sigma-Aldrich and Fisher Scientific International, Inc. (Fairlawn, NJ, USA), respectively.
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4

Analytical Standards for Chromatographic Analysis

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Ultra-pure water (18 mΩ) was obtained from a Milli-Q water purification system (Millipore Co., Ltd., Milford, MA, USA). High-performance liquid chromatography (HPLC)-grade methanol, acetic acid, and 56 analytical standards, including catechinic, scopolin, chlorogenic acid, epicatechinic, vanillic acid, caffeic acid, purerarin, syringic acid, daidzin, glycitin, scopoletin, eriocitrin, umbelliferone, p-coumaric acid, dihydroquercetin, sinapic acid, genistin, liquiritin, ferulic acid, salicylic acid, rutin, isoferulic acid, m-coumaric acid, naringin, hesperidin, resveratrol, xanthotoxol, silydianin, sinapyl alcohol, o-coumaric acid, liquiritigenin, kaempferol, 2’-hydroxygenistein, eriodictyol, daidzein, psoralen, glycitein, quercetin, didymin, bergaptol, naringenin, luteolin, cinnamic_acid, hesperetin, genistein, bergapten, diosmetin, isoliquiritigenin, coumestrol, sinensetin, formononetin, medicarpin, imperatorin, biochanin A, tangeretin, and rotenone (displayed in Table S2), were purchased from Sigma-Aldrich Co., Ltd. The stock solutions of these authentic standards were 10.0 mg of each standard dissolved in 10 mL methanol. Then, the stock solutions were diluted to various concentrations before analysis. All stock solutions were sealed with Parafilm® and stored in a −20 °C freezer.
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5

Isoflavone Compounds Extraction and Antioxidant Analysis

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All chemicals, including solvents, used in the present study were of analytical grade. Isoflavones standards, including daidzein, glycitein, genistein, daidzin, glycitin, and genistin, DPPH (2,2-Diphenyl-1-picrylhydrazyl) free radical (90% purity), ABTS (2,2'-azino-bis-3-ethylbenzo-thiazoline-6-sulfonic acid), Folin-Ciocalteu’s phenol reagent, and sodium carbonate were purchased from Sigma-Aldrich (St. Louis, Mo., USA). The other solvents used in HPLC analysis were purchased from Daejung Chemicals (Siheung, Korea).
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6

Antioxidant Evaluation of Soy Isoflavones

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Dulbecco’s modified Eagle’s medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco BRL (Grand Island, NY, USA). H2O2, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), and dimethyl sulfoxide (DMSO) were purchased from Shoude Biological Co., Ltd. (Nanjing, China). Puerarin, daidzin, glycitin, daidzein, glycitein, genistein and shikimic acid were purchased from Sigma-Aldrich Chemical Co. (St. Louis, MO, USA). Annexin V-FITC/PI apoptosis detection kit was purchased from rom Beyotime Institute of Biotechnology (Beijing, China). 2,7-Dichlorofluorescein dictate (DCFH-DA) ROS kits were purchased from Sigma-Aldrich. Lactate dehydrogenase (LDH), superoxide dismutase (SOD), catalase (CAT) and reduced glutathione (GSH) assay kits were procured from Nanjing Jiancheng Bioengineering Institute (Jiangsu, China). All other chemicals and reagents were of analytical grade. Rat pheochromocytoma line 12 (PC12) cell was purchased from the Institute of Biochemistry and Cell Biology (Shanghai, China).
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7

Fermentation of Soy-Based Bioactive Compounds

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The soybeans, harvested in 2021, were purchased from Heilongjiang Changhe agricultural products processing Co., Ltd. (Hailun, China). The edible mushroom byproduct powder (EMBP, 60 mesh), including White Hypsizygus marmoreu and Hypsizygus marmoreus, were obtained from Chengdu Huiguyuan Biotechnology Co., Ltd. (Chengdu, China). The strains were obtained from the China Center of Industrial Culture Collection (CICC), including Mucor racemosus (CICC 40481), Actinomucor elegans (CICC 40252), Mucor Wutungkiao (CICC 3109), and Aspergillus oryzae (CICC 41736).
The chemicals, including daidzin (98%), genistin (98%), glycitin (98%), daidzein (98%), genistein (98%), glycitein (98%), Folin–Ciocalteu’s phenol reagent, 6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid (Trolox), 2,2-azinobis (3-ethylbenothiazoline-6-sulfonic acid) (ABTS), and 2,2-diphenyl-1-picrylhydrazyl (DPPH) were purchased from Sigma-Aldrich (St. Louis, MO, USA). P-nitrophenyl-β-d-glucoside (p-NPG) and tyrosine were purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). All other chemicals were of reagent grade.
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8

Isoflavone Conversion by L. citreum

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L. citreum cells harboring pCB4270V4-IH were inoculated into MRS (BD) medium. After overnight cultivation, the cells were transferred into a 250 mL baffled flask containing 50 mL of fresh MRS medium at 1:100 dilution and grown at 30 °C with shaking at 200 rpm for 24 h. Next, 10 mL of the cultured cells were harvested by centrifugation at 13,000 rpm for 5 min and washed twice with PBS buffer. The washed cells were resuspended in 10 mL of fresh MRS medium containing isoflavone glycoside forms (genistin, daidzin, and glycitin; Sigma-Aldrich). All the conversion reactions in the flasks were performed at 200 rpm in a shaking incubator at 30 °C. To measure the amount of isoflavone glycoside and aglycone forms, the cells were pelleted by centrifugation at 13,000 rpm for 5 min, and the supernatants thus obtained were filtered using a 0.22 µm syringe filter (Futecs, Daejeon, Korea). The filtered supernatants were diluted in 80% methanol and analyzed by HPLC.
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9

Heterologous expression of a cellulase in Pichia pastoris

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H. insolens Y1 GCMCC 4573 was routinely cultured in the wheat bran medium45 (link). Escherichia coli Trans1-T1 and vector pEASY-T3 (TransGen, Beijing, China) were used for gene cloning. The gene expression vector and heterologous expression host were pPIC9 and P. pastoris GS115 (Invitrogen, Carlsbad, CA), respectively. The DNA purification kit, restriction endonucleases and LA Taq DNA polymerase were purchased from TaKaRa (Otsu, Japan). T4 DNA ligase and the total RNA isolation system kit were purchased from Promega (Madison, WI). The cDNA synthesis kit was purchased from TransGen. Barley β-glucan, Avicel, 4-nitrophenyl β-d-glucopyranoside (pNPG), 4-nitrophenyl β-d-xylopyranoside (pNPX), 4-nitrophenyl α-l-arabinofuranoside (pNPAf), 4-nitrophenyl α-d-galactopyranoside (pNPGal), 4-nitrophenyl α-l-arabinopyranoside (pNPAb), 4-nitrophenyl β-d-cellobioside (pNPC), disaccharides cellobiose, sophorose and gentibiose and soybean flavones daidzin, genistin and glycitin were all purchased from Sigma-Aldrich. Sodium carboxymethylcellulose (CMC-Na), laminarin and lichenin were obtained from Megazyme (Wicklow, Ireland). All other chemicals used were of analytical grade and commercially available.
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10

Soybean Bioactive Compounds Extraction

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Soybeans (cv. BRS 257) were developed by Embrapa Soybean (Londrina, PR, Brazil). Aglycones (daidzein, glicitein, and genistein) and acetylglucosides standards (daidzin, glycitin, genistin) were purchased from Sigma-Aldrich (Saint Louis, MO, USA). The remaining solvents and chemicals were of analytical or HPLC grade.
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