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21 protocols using anti p21

1

Investigating DNA Damage Response

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N-acetyl cysteine (NAC), oxamate and cisplatin were purchased from Sigma-Aldrich (MO, USA); for animal experiments cisplatin was obtained from Teva Pharmaceutical (NC, USA). The following antibodies were used in this study: anti-p53 DO-1(Santa Cruz Biotechnology, CA, USA), anti-phospho-P53 (Cell Signaling, MA, USA), anti-p21 (EMD Millipore, Billerica, MA, USA), p-histone γ H2AX S139 (Cell signaling, MA, USA) and β -actin (Sigma, MO, USA).
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2

Evaluation of NAC-mediated Chemosensitization

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N-acetyl cysteine (NAC) were purchased from Sigma-Aldrich (St. Louis, MO). Carboplatin (CBP) (SAGENT Pharmaceuticals, Schaumburg, IL), cisplatin (CDDP) (Teva Pharmaceuticals, Sellersville, PA) and doxorubicin (Pfizer Inc, New York, NY) were obtained from the institutional inpatient pharmacy. The following antibodies were used in this study: anti-p53 DO-1(Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-phospho- P53 (Cell Signaling, Danvers, MA, USA), anti-p21 (EMD Millipore, Billerica, MA, USA), anti-PARP (Cell Signaling, Danvers, MA, USA), ATM (Santa Cruz Biotechnology, Santa Cruz, CA, USA), p-ATM (EMD Millipore, Billerica, MA, USA), p-Histone H2AX S139 (Cell signaling, Danvers, MA, USA), LDHa, LDHb (Abcam, Cambridge, MA, USA) and β-actin (Sigma, St. Louis, MO, USA).
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3

Immunostaining protocol for protein analysis

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For immunostaining, tissues were fixed in Zn-formalin for 24 hr and embedded in paraffin. Sections were deparaffinized, rehydrated, and prepared by antigen retrieval for 6 min each, and then blocked in 5% donkey serum for 1 hr at room temperature, incubated with either Rabbit anti-BNIP3 antibody at 1:100 (A5683, Abclonal), Rabbit anti-NF-kB-p65 1:400 (8242S, Cell Signaling Technology), Rabbit anti-Phospho-c-jun 1:200 (3270S, Cell Signaling Technology), Rat anti-ki67 1:100 (14-5698-82, ebiosciences), Rabbit anti-pRB-Ser807/811 1:400 (8516, Cell Signaling Technology), anti-p21 1:1000 (ZRB1141, Sigma), Rat anti-Phospho H3 1:1000 (H9908, Sigma), or Goat anti-GFP (ab6673, Abcam) at 1:250 overnight at 4°C, washed, incubated with secondary antibody AF594-anti-rabbit (A-21207, Invitrogen), Alexa594 anti-rat (A-21209, Invitrogen), and Alexa488 anti-goat (11055, Invitrogen) antibodies at 1:200 for 1 hr at room temperature, counterstained with DAPI, washed, and mounted. Slides were visualized and imaged using an Olympus IX71 inverted multicolor fluorescent microscope and a DP71 camera using ×400 magnification. MFI was calculated by measuring average intensity over a fixed threshold for all images. NF-kB staining was imaged via Zeiss LSM880 confocal microscope using ×63 oil-immersion objective, and intensity was measured on 0.8 µm z-sections.
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4

Western Blot Analysis of Cullin Proteins

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Total cell extracts were prepared using Pierce IP lysis buffer (Thermo Fisher Scientific, USA) according to the manufacturer’s instructions. Equal amounts of proteins were subjected to WB analysis. The antibodies used for WBs were anti-β-Actin (mouse, Sigma, USA), anti-CUL1 (rabbit, Thermo Fisher Scientific, USA), anti-CUL2 (mouse, Santa Cruz Biotechnology, USA), anti-CUL3 (rabbit, Cell Signaling Technology, USA), anti-CUL4A (mouse, Sigma, USA), anti-CUL4B (mouse, Sigma, USA), anti-CUL5 (rabbit, Abcam, USA), anti-CUL7 (rabbit, OriGene, USA), anti-Flag (mouse, Sigma, USA), anti-RBX1 (rabbit, Cell Signaling Technology, USA), anti-DCAF1 (rabbit, Abcam, USA), anti-DCAF4 (rabbit, Sigma, USA), anti-DCAF8 (rabbit, Sigma, USA), anti-DCAF11 (rabbit, Sigma, USA), anti-DCAF15 (rabbit, Sigma, USA), anti-DDB1 (rabbit, Sigma, USA), anti-p21 (rabbit, Sigma, USA), and anti-p27 (mouse, Abcam, USA). Signals from WBs were recorded using a ChemiDoc MP (Bio-Rad, USA). All experiments were performed in triplicate.
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5

Imatinib Effects on SW480 Colon Cancer Cells

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The chemical structure of imatinib (Sigma, with a purity ≥98%) is shown in Figure 1. The colon cancer cell line SW480 was provided by the Shanghai Cell Bank of the Chinese Academy of Sciences. Fetal bovine serum (FBS) was purchased from Hyclone, Leibowitz’s L-15 medium and puromycin were bought from Gibco company, and rabbit anti-GAPDH, anti-HGF, anti-p21, and anti-p27 were purchased from Sigma-Aldrich.
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6

Western Blot Analysis of Renal Carcinoma Cells

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Renal carcinoma cancer cells were trypsinization and lysated in NETN 150 buffer (0.5%
NP-40, 20 mM Tris, pH 8.0; 150 mM NaCl, 6 mM EDTA). Protein of 20 µg was separated by
sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to the
nitrocellulose membrane (Axygen, Tewksbury, Massachusetts). We used 5% nonfat milk for
blocking at room temperature. The none sense control (NC) membrane was incubated with
indicated primary antibodies at 4°C for at least 12 hours, followed by horseradish
peroxidase–linked secondary antibody. Immobilon Western Chemiluminescent HRP Substrate kit
(Millipore Corporation, Billerica, Massachusetts) was used for detection. The anti-p21 was
obtained from Cell Signal (Sigma-Aldrich, St Louis, Missouri).
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7

Protein Expression Profiling of Rapha Myr-Treated Cells

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Whole cell protein of untreated and 24 h Rapha Myr® extract (0.5–1.25–2.5% v/v)-treated cells were prepared according to Laemmli (1970) and submitted to Western blot analysis, performed according to Grabowska et al., 2016 [72 (link)]. The primary antibodies used were: anti-integrin α5 (1:1000) (Immunological Sciences, Rome, Italy), anti-GAPDH (1:50,000) (Millipore, Darmstadt, Germany), anti-Poly (ADP-ribose)polymerase (PARP, 1:1000) (BD Biosciences, San Jose, CA, USA), anti-γH2AX Ser139 (1:1000) (Abcam, Cambridge, UK), anti-p53 (1:500) (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p21 (1:500) (Sigma-Aldrich, St. Louis, MO, USA), anti-phospho-p53 Ser15 (1:250), anti-sirt 1 (1:250), anti-phospho-sirt 1 Ser47 (1:250), anti-sirt 3 (1:500), anti-sirt 5 (1:500), anti-sirt 6 (1:1000) and anti-sirt 7 (1:250) (Cell Signalling Technology, Denvers, CO, USA). Each protein target was detected by using specific secondary horseradish peroxidase-conjugated antibodies (1:2000) (Dako, Glostrup, Denmark) and an ECL system (Thermo Scientific, Rockford, IL, USA). The expression level of proteins was measured by densitometric analysis using the software Image J and GAPDH was chosen as the reference protein.
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8

Quantitative Western Blot Analysis

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The cell protein lysates were separated via SDS-PAGE, and were transferred to polyvinylidene difluoride membranes (EMD Millipore, Billerica, MA, USA). Then they were incubated at 4°C overnight in the presence of anti-HMGA1 (Cell Signaling Technology, Boston, MA, USA), anti-P21 (Sigma-Aldrich Co., St Louis, MO, USA), and anti-cyclin D1 (Sigma-Aldrich Co.), respectively. After washing, secondary antibody (Pierce, Rockford, IL, USA) was added into the system. Enhanced chemiluminescence chromogenic substrates were used for quantitative measurement by using Quantity One software (Bio-Rad). GAPDH was used as an internal control.
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9

Western Blot Analysis of Ribosomal Proteins

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Western blotting analysis was performed as previously reported [41 (link)]. The membranes were challenged with anti-rpL3, anti-rpL7a (Primm, Milan, Italy), anti-rpS19 (Sigma-Aldrich), anti-p21 (Sigma-Aldrich), and anti-α-tubulin (Santa Cruz Biotechnology). Proteins were visualized with enhanced chemiluminescence detection reagent according to the manufacturer's instructions (Pierce, Rockford, Illinois).
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10

A549 Cell Line Analysis Protocol

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A549 cell line was cultured in DMEM with 10% FBS, 1% penicillin and streptomycin at 37°C, 5% CO2. L-glutamine and dialyzed FBS were purchased from Life technologies (Carlsbad, CA). siRNA expression vector pSilencer™ Puro Expression Vectors kit was from Applied Biosystems (Life technologies, Carlsbad, CA). RNeasy mini kit was from Qiagen (Hilden, Germany). Primary antibodies Anti-p53 was from Santa Cruz Biotechnology (Dallas, Texas). Anti-p21, anti-HIF-1α, anti-β-actin were from Sigma (St. Louis, MO) and anti-VDAC/porin were from Abcam (Cambridge, UK). Anti-phospho-PDHE1-A type (ser293) was from Millipore (Massachusetts, USA). Anti-SLC25A10 was from Atlas Antibodies (Stockholm, Sweden).
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