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5 protocols using deoxycholic acid

1

Quantitative Bile Acid Analysis

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Optima grade acetonitrile and water were purchased from Fisher Scientific (Loughborough, UK). Ammonium acetate was purchased from Sigma-Aldrich (Dorset, UK). Formic acid was purchased from Fluka (Buchs, Switzerland). Bile acid standards, including tauro-alpha-muricholic aicd (T-α-MCA), tauro-beta-muricholic acid (T-β-MCA), tauro-omega-muricholic acid (T-ω-MCA), alpha-muricholic acid (α-MCA), beta-muricholic acid (β-MCA), taurohyocholic acid (THCA), glycoursodeoxycholic acid (GUDCA), tauroursodeoxycholic acid (TUDCA), hyocholic acid (HCA), taurohyoxydeoxycholic acid (THDCA), taurocholic acid (TCA), cholic acid (CA), ursodeoxycholic acid (UDCA), hyodeoxycholic acid (HDCA), glycodeoxycholic acid (GDCA), taurodeoxycholic acid (TDCA), chenodeoxycholic acid (CDCA), and deoxycholic acid (DCA) were purchased from Steraloids, Inc. (Newport, RI). Standard solutions of these 20 bile acids were prepared at concentrations of 0.5, 10, 50, 100, 500, 1500, 5000, and 10 000 nM in a solution of 20% (v/v) acetonitrile and water.
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2

Analytical Protocol for Sterols and Bile Acids

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Neutral sterols and bile acids were analyzed as described by Anita Fechner et al. [21 (link)] and Sylvia Keller [22 (link)] using an Agilent GC 7890B-5977B MSD GC-MS system (Agilent Technologies) equipped with a DB-5MS column (0.25 µm, 30 m × 0.25 mm). Total sterols were defined as the sum of cholesterol, coprostanol (Steraloids Inc., Newport, RI, USA), coprostanone (Carbosynth Ltd., Newbury, UK), cholestanol, cholestanone, and cholestenone, and 5α-cholestane was used as the internal standard. All reagents except for coprostanol and coprostanone were purchased from Sigma Aldrich Corporation
Sterol extracts were saponified by the addition of NaOH for bile acid analysis. The primary external standards were cholic acid and chenodeoxycholic acid, and the secondary external standards were iso-lithocholic acid (Steraloids Inc.), lithocholic acid, iso-deoxycholic acid (Steraloids Inc.), and deoxycholic acid; hyodeoxycholic acid was used as the internal standard. All reagents were purchased from Sigma-Aldrich Corporation unless otherwise indicated.
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3

Baicalin and Bile Acid Regulation

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Baicalin (>98%) was purchased from Dalian Meilun Biotechnology Co., Ltd (Meilunbio, Dalian, China). EE was purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Standards for BAs for cholic acid (CA), deoxycholic acid (DCA), chenodeoxycholic acid (CDCA), β-muricholic acid (β-MCA), taurocholic acid (TCA), taurodeoxycholic acid (TDCA), tauromuricholic acid (T-MCA), taurochenodeoxycholic acid (TCDCA), glycocholic acid (GCA), glycoursodesoxycholic acid (GUDCA), glycohyocholic acid (GHDCA), glycochenodeoxycholic acid (GCDCA), taurohyocholic acid (THDCA), glycodeoxycholic acid (GDCA), and interior label d4-glycochenodeoxycholic acid (d4-GCDCA) were obtained from Steraloids (Newport, RI, USA).
Antibodies directed against FXR, CAR, PXR, VDR, cholesterol 7a-hydroxylase (CYP7A1), and sterol 27-hydroxylase (CYP27A1) were purchased from Absin Biochemical Company (Shanghai, China). Antibodies directed against Sirt1, HNF-1α, tumor necrosis factor α (TNF-α), interleukin 1 beta (IL-1β), IL-6, and NF-κB were purchased from Cell Signaling Technology (Beverly, MA, USA). An antibody against BSEP was obtained from Santa Cruz Biotechnology (CA, USA). And an antibody against MRP2 was obtained from Abcam (Cambridge, UK).
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4

Synthesis and Characterization of Bile Acid Derivatives

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Deoxycholic acid (DCA), chenoDeoxycholic acid (CDCA), cholic acid (CA), α-muricholic acid, β-muricholic acid, glycoDeoxycholic acid (GDCA), glycochenoDeoxycholic acid (GCDCA), and glycocholic acid (GCA) were obtained from Steraloids, Inc. Bile acid structures are shown in fig. S1. Bile acid A (37 ), 5-cholanic acid-3α,4β,7α-triol (7)(38 (link)), and AMPP (39 (link)) were synthesized according to published procedures. N-(3-dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride (EDC), 4-(dimethylamino)pyridine (DMAP), diethylamine, N,N-dimethylformamide, trisodium citrate, sodium hydroxide (NaOH), chloroform, Dulbecco’s modified Eagle’s medium, fetal calf serum, and penicillin G and streptomycin sulfate were obtained from Sigma–Aldrich. HPLC solvents (methanol and acetonitrile) were HPLC grade and were purchased from EMD Chemicals. Milli-Q ultrapure water was prepared in-house with a Milli-Q Integral Water Purification System.
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5

Bile Acid Compound Sourcing Protocol

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Taurocholic acid (TCA), tauro-β-muricholic acid (TMCA), tauromurideoxycholic acid (TMDCA), taurochenodeoxycholic acid (TCDCA), taurodeoxycholic acid (TDCA), taurolithocholic acid (TLCA), cholic acid (CA), α-muricholic acid (αMCA), β-muricholic acid (βMCA), ω-muricholic acid (ωMCA), murideoxycholic acid (MDCA), ursodeoxycholic acid (UDCA), chenodeoxycholic acid (CDCA), deoxycholic acid (DCA), and lithocholic acid (LCA) were purchased from either Steraloids, Inc. (Newport, RI) or Sigma-Aldrich (St Louis, MO). Clofibric acid (CLOF) was purchased from Sigma-Aldrich Co. (St. Louis, MO). Chloroform, agarose, and ethidium bromide were purchased from AMRESCO Inc. (Solon, OH). RNA-Bee was purchased from TelTest Inc. (Friendswood, TX). All other chemicals, unless indicated, were purchased from Sigma-Aldrich Co. (St. Louis, MO).
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