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30 protocols using architect c8000 analyzer

1

Quantification of Antibiotics in Dialysate and Media

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Dialysate fractions of 50 μL (10 min) or 100 μL (20 min) and 100 μL samples of medium were simultaneously collected. The unbound fractions from the media were obtained using ultrafiltration (Centrifree® Ultrafiltration Devices, Merck Millipore Ltd., Cork, Ireland) to separate the bound concentration and the unbound concentration. Gentamicin and vancomycin total concentrations and unbound concentrations were measured using an immunoassay (Abbott® Architect c8000 analyzer, Abbott Laboratories, North Chicago, IL, USA), with a coefficient of variation < 5% and a Lower Limit of Quantification (LLOQ) of 0.5 mg/L and 2.00 mg/L, respectively. The intraday and interday precision and accuracy of this assay was determined by a recovery study on spiked samples. The accuracy of this assay is continuously monitored by participation in external quality control programs.14, 15
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2

Remote Automated Randomization for Clinical Study

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This was undertaken using the OxMaR software package22 (link) which allowed for remote web-based automated electronic randomization with minimization on the basis of age, sex, ethnicity, and whether the person had diabetes. Laboratory analysis of samples and clinical care of participants were undertaken by staff who were blinded to the randomization status of the participants. Urine sodium was analyzed using an ion-selective electrode and urine and plasma creatinine using enzymatic analysis, both on the Abbott Architect C8000 analyzer (Abbott Laboratories, Maidenhead, UK). Both methods demonstrated good longitudinal assay accuracy through participation in external quality assurance programs.
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3

Diabetic Kidney Disease Biomarkers

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Venous blood samples were taken for biochemical analyses, after at least 12 hrs of fasting. Fasting glucose, HbA1C, total cholesterol, triglycerides, low-density lipoprotein cholesterol (LDL-C), and high-density lipoprotein cholesterol (HDL-C), serum creatinine were studied for all patients. HbA1C was determined using HPLC-UV detector. The other parameters were measured using Abbott Architect c8000 analyzer (Abbott Laboratories, Abbott Park, Illinois) and original measurement kits. Microalbuminuria was determined by a commonly used clinical index (urinary albumin-to-creatinine ratio). Urinary albumin and creatinine were measured in morning spot urine twice with an interval of 3 months for all patients. The diabetic patients with an albumin-to-creatinine ratio ≤30 mg/g were categorized as normoalbuminuria group (N=98), whereas the diabetic patients with an albumin-to-creatinine ratio 30–300 mg/g were categorized as microalbuminuria group (N=82). Patients with macroalbuminuria (≥300 mg/g) were not included in our study. eGFR was calculated based on Modified Diet in Renal Disease formula which is recommended in patients with diabetes.14 (link)
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4

Clinical Blood Chemistry Analysis

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Serum ALT and GGT were analyzed by standard clinical chemical methods on an Abbott Architect analyzer following the instructions of the manufacturer (Abbott Laboratories, Abbott Park, IL, USA). Assays of high-sensitivity C-reactive protein (CRP) were carried out using a latex immunoassay (Sentinel Diagnostics, Milan, Italy) on Abbott Architect c8000 analyzer. Determinations of total cholesterol, high-density lipoprotein-associated cholesterol (HDL), low-density lipoprotein associated cholesterol (LDL) and total triglycerides were based on standard enzymatic methods. All laboratory tests were subjects to continuous external quality control programs organized by Labquality, Finland and CDC (Center for Disease Control and Prevention) quality assurance and standardization program for serum lipids. The cut-offs for the normal limits of the parameters were as follows: ALT (50 U/L men; 35 U/L women), GGT (60 U/L men; 40 U/L women), CRP (3.0 mg/L), cholesterol (5 mmol/L), HDL cholesterol (1.0 mmol/L men, 1.2 mmol/L women), LDL cholesterol (3.0 mmol/L), triglycerides (1.7 mmol/L).
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5

Measurement of Urine Biomarkers and NSAIDs

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Specific gravity was measured by the refractometer (UN‐4000 analyzer, Sysmex Corporation, Kobe, Japan). Albumin, creatinine, and sodium were assessed by bromocresol purple, enzymatic (creatininase/creatinase/sarcosine oxidase), and indirect ion‐selective electrode assays, respectively, using the Architect c8000 analyzer (Abbott Diagnostics, Abbott Park, IL, USA) with proprietary reagents. NGAL was measured with a two‐step chemiluminescent immunoassay using Architect i2000 analyzer (Abbott Diagnostics).22 Analyses with urine dipsticks were performed using meditape UC‐10S (Sysmex) urinalysis test strips.
Both pre‐ and post‐race urine samples were tested for NSAIDs/analgesics. Prior to measurement, the urine samples were treated with beta‐glucuronidase, after which paracetamol, ibuprofen, diclofenac, and naproxen were quantified by an in‐house validated LC‐MS/MS method using Acquity UPLC H‐class system and Xevo TQD mass spectrometer (Waters Corporation). A case was considered positive for the intake of NSAIDs/analgesics when at least one of two samples was found to be positive for the tested compounds.
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6

Quantifying Oxidative DNA Damage in Urine

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An ELISA kit (OxiSelect Oxidative DNA Damage ELISA Kit, Cat. No: STA-320; Cell Biolabs Inc., San Diego, CA, USA) was used to detect urine 8-Oxo-2’-deoxyguanosine (8-OHdG) concentration, which was stated as ng/mg creatinine. Coefficients of intra- and inter-assay variations were 3.0% (n=20), and 3.9% (n=20), respectively.
Other biochemical parameters were measured using routine methods with commercial kits. Urine creatinine (spot) level was measured using Jaffe method with Architect c8000 analyzer (Abbott Diagnostics, Lake Forest, IL, USA). Serum creatinine clearance was calculated using Cockroft-Gault formula. Albumin excretion in 24-hour urine samples was measured using Roche Hitachi P800 analyzer (Roche Diagnostics, Rotkreuz, Switzerland) with ALBT2 microalbumin kit in 24-hour urine samples and mean value was calculated as daily albumin excretion (11 ). Normoalbuminuria was defined as albumin excretion of ≤30 mg/24h. Microalbuminuria (MAU) and clinical albuminuria were defined as albumin excretion of 30–299 mg/24h and ≥300/24h, respectively (11 ).
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7

Plasma and CSF Osmolality Measurement

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A separate set of animals were decapitated 30 min or two hours after HTS/ITS administrations, and their trunk blood was collected in EDTA tubes. The blood samples were centrifuged, and the separated plasma was collected. Other set of animals were anesthetized with a mixture of ketamine (100 mg/kg) and dexmedetomidine (0.5 mg/kg) administered together subcutaneously (2 mL/kg) 30 min or two hours after HTS/ITS administrations, and CSF samples were collected via a cannula placed in the CM in a similar manner as before intracisternal tracer administrations. The osmolalities of the plasma and CSF samples were measured by the freezing-point method using a Type 15 Micro-Osmometer (Löser Meßtechnik). Sodium concentration of the plasma samples were determined with ion-selective electrode-based method using an ARCHITECT c8000 analyzer (Abbott Diagnostics).
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8

Comprehensive Blood Biomarker Analysis

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The ARCHITECT C 8000 analyzer, Abbott®, was used for almost all plasma biochemical analyses, which were conducted on the day of the protocol evaluation. Serum levels of 25-hydroxyvitamin D (25OHD) were determined by immunochemiluminescence (LIAISON®). HbA1C (%), total cholesterol (mg/dL), HDL (mg/dL), triglycerides (TG-mg/dL), INR (international normalized ratio), and blood count (XN-3000, Sysmex®) were analyzed retrospectively.
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9

Metabolic Syndrome Biomarkers Measurement

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MetS involves a conglomerate of pathological features including obesity, insulin resistance, hypertension, high triglyceride levels, cardiovascular disease, and systemic inflammation [27 (link),28 (link)]. Accordingly, we measured several of these features in the animals exposed to fructose. Blood was collected from the tail vein after 6 h of fasting, and then the serum samples were obtained. Glucose levels were measured according to the hexokinase/G-6-PDH method, using Architect Analyzer (Abbott Laboratories, Abbott Park, IL), and insulin levels were measured via chemiluminescence (Beckman Coulter); in both cases, the manufacturers’ instructions were followed. The HOMA, an index of insulin resistance [29 (link),30 (link)], was calculated using the following formula: HOMA-R = fasting glucose (mmol l−1) × fasting insulin (μIU ml−1)/22.5. The levels of triglycerides and cholesterol were assessed enzymatically using the Architect c8000 analyzer (Abbott Laboratories, Abbott Park, IL).
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10

Plasma Biomarkers Measurement Protocol

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Blood samples were collected following an overnight fast. Blood was centrifuged at 2000×g for 20 min and the plasma was frozen at −40°C until analysis (within 3 months). Plasma glucose, calcium, phosphorus, and C-reactive protein (CRP) were assessed on Architect C8000 analyzer (Abbott Laboratories, Abbott Park, IL), using the respective reagents kits. Plasma 25-hydroxyvitamin D (25-OHD) and insulin concentrations were measured by chemiluminescence immunoassay methods using the Liaison analyzer (DiaSorin Inc., Stillwater, MN) and the respective reagents kit. Vitamin D status was evaluated according to the standards of the Institute of medicine (IOM). Vitamin D deficiency, insufficiency, and sufficiency were defined as plasma 25-OHD concentrations below 12 µg/L, 12 to 20 µg/L, and over 20 µg/L, respectively (24 ). Insulin sensitivity/resistance was assessed using two indexes; the homeostasis model assessment of insulin resistance (HOMA-IR) and the quantitative insulin sensitivity check index (QUICKI), according to the following equations (25 (link), 26 (link)): HOMA-IR=[(fasting insulin in µU/mL) − (fasting glucose in mg/dL)/405]; QUICKI=1/[log(fasting insulin in µU/mL)+log(fasting glucose in mg/dL)].
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