The largest database of trusted experimental protocols

5 protocols using cd3 clone sk7

1

PBMC Cytokine Response Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 2 to 4 × 106 human PBMCs expanded with specific Immuno-STAT or peptide were pretreated with brefeldin A (BFA) and monensin (ThermoFisher), plated in a 24-well plate, and stimulated at a 1:1 ratio with T2 cells (ATCC) that had been loaded with CMV pp65495–503 (NLVPMVATV) or Mart126–35 (ELAGIGILTV) or HIV-1 p17 Gag77–85 (SLYNTVATL; SL9) peptide for 2 h and washed twice. Cells were stimulated for 5 h, washed, stained with Fixed Viability Stain 780 (BD Biosciences), antibodies against CD3 (clone SK7, BioLegend), CD8 (clone SK1, BD Biosciences) and CD107a (clone H4A3, BD Biosciences), and fixed using IC fixation buffer (ThermoFisher). Cells were next washed in permeabilization buffer (eBioscience), stained with antibodies against TNF-α (clone MAb11, BD Biosciences), IFN-γ (clone 4S.B3, BioLegend), and granzyme B (clone GB11, BD Biosciences) for 30 min at room temperature, washed, and analyzed. For representative FACS plots and pairwise marker quantitation, PBMC were stimulated as described above using T2 cells loaded with 100 nM peptide. For peptide titration studies, PBMC were stimulated as described above using T2 cells loaded with 1 × 10–13, 1 × 10–12, 1 × 10–11, 1 × 10–10, 1 × 10–9, 1 × 10–8, 1 × 10–7, 1 × 10–6, or 1 × 10–5 g/ml peptide.
+ Open protocol
+ Expand
2

Monocyte Isolation and Activation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The human CD14 positive selection kit (StemCell Technologies) was used to isolate or deplete CD14+ monocytes from PBMC according to the instructions of the manufacturer. CD14-depleted PBMC were cultured with 2.5% S. aureus-CFS in the presence or absence of LGG-CFS for 24 h with brefeldin A present during the last 4 h of incubation. Whole PBMC served as control. Isolated CD14+ monocytes were cultured at a concentration 0.5 × 106/ml with 2.5% L. reuteri-CFS, 2.5% S. aureus-CFS, 100 ng/ml ultrapure LPS, or 10 μg/ml Pam3Cys (both Invivogen) for 14 h before culture supernatants were collected. Purity was assessed for all donors by staining with CD3 (clone: SK7) (Biolegend) and CD14 (clone: B159) (BD Biosciences). The mean percentage of CD14+ cells was 0.49 ± 0.28% in the monocyte-depleted PBMC and 97.4 ± 1.67% after purification.
+ Open protocol
+ Expand
3

Flow Cytometry Analysis of PBMCs and CSF

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometry analysis was performed using antihuman antibodies to BDCA-2 (clone 201A; BioLegend, San Diego, CA), CD33 (clone P67.6; BioLegend), CD14 (clone 61D3; eBioscience, San Diego, CA), Lyve-1 (clone 537028; R&D Systems, Minneapolis, MN), CD3 (clone SK7; BioLegend), CD19 (clone HIB19; eBioscience), CD16 (clone B73.1; BioLegend), CD1c (clone L161; BioLegend), Lox-1 (clone 15C4; BioLegend), and human leukocyte antigen DR (HLA-DR) (clone Immu-357; Beckman Coulter, Brea, CA). One million PBMCs and between 2 × 104 and 40 × 104 CSF cells were incubated with human-Fc block (BD Biosciences, San Jose, CA) for 10 minutes at RT and then with antibodies for 20 minutes at 4°C. Subsequently, the samples were washed with PBS + 2% FBS (flow buffer) for 5′, spun at 500g, and resuspended in 200 μL of flow buffer. The samples were run on a Gallios flow cytometer (Beckman Coulter Life Sciences) on the same day of the collection. The cells were analyzed using FlowJo software (Tree Star, Ashland, OR).
+ Open protocol
+ Expand
4

Multiparameter Flow Cytometry Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aliquots of transduced T cells were analyzed by 7-color flow cytometry using a panel of surface molecule specific antibodies, peptide tetramer, and dextramer: CD3 (clone SK7, Biolegend), CD4 (clone RPA-T4; Biolegend), CD8 (clone 3B5; Biolegend), anti-IgG (polyclonal Goat anti-human; Jackson ImmunoResearch), CD45RA (clone MEM-56; Thermo Fisher), and CCR7 (clone 3D12; BD Biosciences); HLA-A*0201 PR1 tetramer (Baylor tetramer core facility), HLA-A*0201 CMV pp65 dextramer and HLA-A*0201 PR1 dextramer (Immudex, Denmark).
+ Open protocol
+ Expand
5

Phenotypic Analysis of CAR T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
CAR T cells were stained with fluorescence-conjugated monoclonal antibodies against CD3 (clone SK7, Biolegend, Heidelberg, Germany), CD8 (clone RPA-T8, Biolegend), CD4 (clone SK3, Biolegend), CD45RO (clone UCHL1, BD Pharmingen, Heidelberg, Germany), CD197 (clone G043H7, Biolegend), CD279 (clone EH12.2H7, Biolegend), TIM-3 (clone F38.2E2 eBioscience, Frankfurt, Germany), LAG-3 (clone 3DS223H, eBioscience) and the CAR-specific anti-idiotype antibody ganglidiomab, provided by H. Lode, Greifswald, Germany, and fluorescence-labeled with the Mix-n-Stain Kit (Sigma-Aldrich, Taufkirchen, Germany) or alternatively with a fluorescein isothiocyanate (FITC)-labeled goat-anti-human Fcγ Ab recognizing the hinge domain (Jackson ImmunoResearch, Pennsylvania, USA, product no. 109-095-098) for the CD19CAR T cells. Samples were fixed with 1% paraformaldehyde (PFA) and acquired directly or not later than 24 h after staining. For each sample, 10 000 cells within the respective gates were analyzed with FACS Diva 9.0, using FACS Celesta flow cytometer (BD Biosciences, Heidelberg, Germany) and FlowJo version 10 (FlowJo, LLC, Ashland, OR, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!