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Hoechst

Manufactured by Vector Laboratories
Sourced in United States

Hoechst is a fluorescent dye that binds to DNA. It is commonly used in various laboratory applications to visualize and quantify nucleic acids.

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12 protocols using hoechst

1

Immunofluorescence Imaging of DNA Damage

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Cells were seeded on glass slides (0.70 cm2 or 1.70cm2) and fixed at indicated times in 10% fixation last 10 minutes followed by permeabilization last 30 minutes in 0.5% Triton X-100 (Sigma cat#93443) in phosphate-buffered saline (PBS). Subsequently, cells were incubated in blocking solution (1% BSA, IgG free, protease free, 4% Normal Donkey Serum (Jackson ImmunoReaseach cat#001-000-162, Sigma cat#D966) for 60 min prior to incubation with primary antibodies over night at 4°C (53BP1: Novus biologicals cat#NB 100-304, PML: Santa Cruz cat#sc-9862, γH2AX: Upstate cat#05636). Cells were then washed with PBS and incubated with indicated secondary antibodies for 60 minutes (Life technologies Alexa Fluor anti-goat/mouse/rabbit 488nm/594nm). The slides were finally washed, counterstained with Hoechst and mounted with Vectashield (Vector Laboratories cat#H-1000). Images were acquired using a Axioobserver Zi Zeiss Scanning Microscope and processed/analyzed using Photoshop CS5 and the Axiovision software (Assay builder).
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2

Retinal Flat Mount and Sectioning

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Rats were euthanized by isoflurane inhalation followed by cervical dislocation which is approved by the Panel on Euthanasia of the American Veterinary Medical Association. Eyes were removed and fixed in 4% paraformaldehyde. Eyes used for flat mounts had the anterior segment and vitreous removed and then retina and the remaining eyecup were isolated and flat mounted separately. Only the RPE is visualized on the surface of the flat mounted eyecup, so this will be referred to as RPE flat mount. Eyes for ocular sections were frozen in optimal cutting temperature media (Fisher Scientific, Walkersville, MD) and 10 μm frozen sections were placed on slides. Sections were stained with Hoechst (Vector Laboratories, Burlingame, CA) and anti-GFP antibody (A21312, life Technologies Corporation, Eugene, OR). Both flat mount and ocular sections were examined by fluorescence microscopy. Two investigators participated in all experiments. One investigator coded slides and the other examined them and obtained images. After the images were obtained the investigators broke the code together to complete the analysis.
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3

Quantifying Gut Microbiome-Epithelium Interactions

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FISH analyses were used to quantify the distance of the colon bacteria from the epithelium and quantify the inner mucus layer length in the lumen. Tissue fixation (24–48 h) was performed using Carnoy fixative [60% (v/v) dry methanol, 30% (v/v) chloroform, 10% (v/v) glacial acetic acid]. After fixation, the tissue was washed twice in dry methanol for 30 min each, followed by two times in absolute ethanol for 20 min each, and incubated in two baths of xylene for 15 min each before paraffin embedding. Before rehydrating the slides, the tissues were incubated in washing (20 mM Tris-HCl, 0.9% NaCl; pH 7.4) and hybridization (20 mM Tris-HCl, 0.1% SDS; pH 7.4) buffers at 56°C overnight. Then slides were rehydrated and dipped in washing buffer at 56°C for 10 min. Probes (EUB338-1/2/3, for total of 16S bacterial staining) diluted in the hybridization buffer covered the slides with parafilm at 56°C overnight. The slides were stained for mucin using lectin (1:200, Vector Laboratories) for 2 h at room temperature in the dark. Hoechst (1:10, Vector Laboratories) was used to stain the nuclei. The results were viewed and analyzed with a fluorescent microscope using red, green, and blue channels (Zeiss).
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4

Immunofluorescent Analysis of Mouse Skin

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Dorsal skins were harvested, fixed in 4% paraformaldehyde, dehydrated with sucrose and embedded in OCT. The frozen sections (8 μm thick) were incubated with rabbit polyclonal anti-mouse K15 (Abcam, MA, UK), rabbit polyclonal anti-mouse Ki67 (Abcam, MA, UK), (1:200) for 4°C overnight. The sections were then washed in PBS with Tween 20 and incubated with Alexa Fluor 488-conjugated goat anti-rabbit IgG and Alexa Fluor 594-conjugated goat anti-rabbit IgG (Invitrogen, CA, USA), respectively, for 1 h. Subsequently, frozen sections were stained with Hoechst (Vector, Burlingame, CA) at a 1:2000 level. The sections were observed via fluorescence microscopy (Olympus BX53, JP).
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5

Worm Fixation and Fluorescence Imaging

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Worms were washed twice in PBS-T and kept for 30 to 60 minutes in PBS-T in a 1.5-mL tube to allow emptying of intestines. PBS-T was removed, and 1.5 ml of 100% ethanol then added. Worms were precipitated by gravity, and ethanol then removed completely before resuspension of worms in 25 μL MVD (50% M9, 50% Vectashield (Vector), 7 μg/ml Hoechst (bisBenzimide H 33258)). Fixed worms were pipetted onto a slide, and a 20 × 40 mm ethanol-washed coverslip was applied with slight pressure.
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6

Immunofluorescence Staining of Myogenic Markers

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MSCs treated with H2O2 and/or Gel were cultured on cell slide in 24-well plate bottom with DMEM medium containing 10% FBS. MSCs on cell slide were fixed in 4% paraformaldehyde for at least 30 min at room temperature (RT) and then washed with PBS for 10 min at RT. Permeabilization and blocking were carried out simultaneously in PBS containing 15% FBS, 2% BSA, and 0.1% saponin (all Sigma-Aldrich, USA) for 30 min at RT. Cells were rinsed with PBS and incubated overnight at 4°C with primary antibodies diluted 1:100 in PBS containing 15% FBS and 2% BSA. Primary antibodies were Rabbit anti-MYOG (Proteintech, 18943-1-AP) and Rabbit anti-MYOD1 (Abcam, ab1835). Stained cells were then washed three times for 10 min each with PBS followed by secondary antibodies diluted 1:100 in PBS. Hoechst (Vector Laboratories, USA) for nuclear/DNA labeling was used at a 1:1000 dilution in PBS. Cells were washed three times for 10 min each and quantified in ProLong Gold (Vector Laboratories, USA) overnight at 4°C.
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7

Quantifying Aortic VCAM-1 Expression in Diet-Induced Atherosclerosis

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While sacrificing mice that were fed a WD for 7 months (see 2.2.), hearts and aortas were embedded in optimal cutting temperature (OCT) compound and snap-frozen for further analysis. Frozen sections of 10 μm thickness were stained with oil-red-O, and serial 5 μm cryo-sections of the aortic sinus area were used for immunostaining as previously described [19] . For immunostaining, sections were fixed in cold acetone for 10 min, then washed with PBS for 2 times, blocked in background buster (Innovex) at 37 °C for 1 h, then incubated with rat anti-mouse CD106 (Millipore) for identifying VCAM-1 at 4 °C for overnight. The next morning, sections were washed with PBS for 3 times, then incubated with Alexa Fluor 488 goat-anti rat IgG (Invitrogen) and at 37 °C for 1 h. Slides were washed, and cell nuclei were counterstained with Hoechst (Vector Labs, Burlingame CA). Images were captured using Olympus IX81 microscope. Quantification of images was performed as described before [19] . For quantification of VCAM-1 expression in the lesion, multi-channel images were split first and the density (green component only) of VCAM-1 was measured using Image J software. Blind analysis was performed for all images. At least two sections from each mouse were analyzed and all the experimental mice (n ≥ 19) were used for analysis.
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8

Retinal Flat Mount and Sectioning

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Rats were euthanized by isoflurane inhalation followed by cervical dislocation which is approved by the Panel on Euthanasia of the American Veterinary Medical Association. Eyes were removed and fixed in 4% paraformaldehyde. Eyes used for flat mounts had the anterior segment and vitreous removed and then retina and the remaining eyecup were isolated and flat mounted separately. Only the RPE is visualized on the surface of the flat mounted eyecup, so this will be referred to as RPE flat mount. Eyes for ocular sections were frozen in optimal cutting temperature media (Fisher Scientific, Walkersville, MD) and 10 μm frozen sections were placed on slides. Sections were stained with Hoechst (Vector Laboratories, Burlingame, CA) and anti-GFP antibody (A21312, life Technologies Corporation, Eugene, OR). Both flat mount and ocular sections were examined by fluorescence microscopy. Two investigators participated in all experiments. One investigator coded slides and the other examined them and obtained images. After the images were obtained the investigators broke the code together to complete the analysis.
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9

Magnolol Inhibits p65 Nuclear Translocation

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The effect of magnolol on the nuclear translocation of p65 was evaluated by immunofluorescence staining. Briefly, BMMCs treated with RANKL in the absence or presence of 20 µg/ml magnolol were fixed with 4% paraformaldehyde for 10 min and permeabilized with 0.1% Triton X-100 in PBS for 5 min. The cells were washed with 0.1% BSA-PBS and incubated with an anti-p65 monoclonal antibody overnight at 4°C, followed by a biotinylated goat anti-mouse IgG and fluorescein-conjugated streptavidin (Vector Laboratories, Burlingame, CA, USA) for 1 h at room temperature and Hoechst (Vector Laboratories) was used for counterstaining for 2 days. The localization of p65 was visual-ized by immunofluorescence analysis (×400 magnification) and the percentage of nuclei fluorescence intensity of p65 in 3 random fields were measured in each group with ImageJ software.
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10

Immunocytochemical Analysis of Wnt7a and α-SMA

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For the immunocytochemical analysis, cells were fixed in 4% paraformaldehyde for 30 min at 4°C and then permeabilized by 0.1% Triton X-100 for 15 min, followed by blocking with 3% fetal bovine serum for 30 min. Primary antibodies: rabbit polyclonal antibodies to Wnt7a and α-SMA (Abcam, MA, UK) were incubated with the cells overnight at 4°C. Secondary antibodies: an Alexa Fluor 594-conjugated goat anti-rabbit IgG antibody and an Alexa Fluor 488-conjugated goat anti-mouse IgG antibody (Invitrogen, CA, USA) were added to the cells and incubated for 1 h at 37°C. Finally, the cells were stained with Hoechst (Vector, Burlingame, CA) at a 1 : 3000 dilution and were examined under a fluorescence microscope (Olympus BX53, JP).
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