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29 protocols using hrp conjugated goat anti rabbit igg secondary antibody

1

Immunohistochemical Analysis of T-cell Subsets

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CD3+ T cells were immunostained in 5 µm sections of formalin-fixed paraffin-embedded ID8 tumor tissues using a 1:100 dilution of a primary CD3-specific rabbit monoclonal IgG antibody (Abcam, Cambridge, UK; catalog #ab16669) followed by a horse radish peroxidase (HRP)-conjugated goat anti-rabbit IgG secondary antibody (Abcam; catalog #ab214880). CD4+ T cells were immunostained in 5 µm sections of ovarian tumors by incubation with a 1:1,000 dilution of a primary CD4-specific rabbit monoclonal IgG antibody (Abcam; catalog #ab183685), followed by HRP-conjugated goat anti-rabbit IgG secondary antibody (Abcam; catalog #ab214880). Visualization was achieved using the DAB substrate kit (BD Phar-mingen, San Diego, CA, USA; catalog #550880), followed by hematoxylin counterstaining and mounting of sections in mounting medium (Richard-Allan Scientific, Kalamazoo, MI, USA; catalog #4112) for examination by light microscopy.
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2

Western Blot Analysis of Stra8 and GFRA1

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Proteins were extracted from testicular tissue specimens using radioimmunoprecipitation assay buffer (RIPA, Abcam, Germany) supplemented with protease and phosphatase inhibitors and centrifuged. After determining the concentration of proteins using BCA Protein Assay Kit (Abcam, USA), an equal amount of the extracted protein in each sample was separated using SDS-PAGE and transferred to the nitrocellulose membrane. Following blockage of membranes in 5% non‐fat dry milk for 2 h at room temperature, the membranes were incubated with primary antibodies against Stra8 (1:1000, Abcam, USA) and Gfra1 (1:1000, MyBioSource, Inc.) at 4 °C overnight. Then, the membranes were washed three times with Tris buffered saline with 0.1%Tween 20 (TBS-T, Abcam, Germany) and incubated with horse radish peroxidase (HRP)-conjugated goat anti-rabbit IgG secondary antibody (1:2000, Abcam, USA) for 1 h at room temperature. The expression rate of Stra8 and GFRA1 proteins was assessed using enhanced chemiluminescence. Finally, the intensity of the bands was normalized to GAPDH and analyzed using the ImageJ software.
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3

Caspase-3 and AIFM2 Immunofluorescence

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Immunofluorescence staining was performed using antibodies against Caspase-3 (1:500; Abcam, Cambridge, UK) and AIFM2 (1:100; Affinity Biosciences) following the previously mentioned protocol. After incubation with HRP-conjugated goat anti-rabbit IgG secondary antibody (1:1000; Abcam), the nuclei were stained with DAPI (Beyotime Biotechnology, Shanghai, China). The immunofluorescence signals were examined using an A1 fluorescence microscope (Zeiss, Oberkochen, Germany).
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4

Protein Expression Analysis in VC-Treated CAL27 Cells

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Protein extraction was performed on CAL27 cells treated with different concentrations of VC using radioimmunoprecipitation assay buffer containing a protease inhibitor cocktail and a phosphatase inhibitor cocktail. The protein was separated by 10% SDS/PAGE gel and transferred to a polyvinylidene fluoride membrane. After blocking with BSA for 2 h, the membrane was incubated overnight at 4°C with a primary antibody, including rabbit anti-p53 (1:1,000, Abcam), anti-p21 (1:1,000, Abcam), anti-Bcl-2 (1:1,000, Abcam), anti-Bax (1:1,000, Abcam), anti-cleaved-caspase-3 (1:1,000, Abcam), and glyceraldehyde 3-phosphate dehydrogenase (1:1,000, Abcam). After washing three times with Tris-buffered saline and Tween 20 (TBS-T), the membrane was incubated with an HRP-conjugated goat anti-rabbit IgG secondary antibody (1:2,000, Abcam) for 2 h. After three washes with TBS-T, the blots were incubated with a super-signal western Pico chemiluminescent substrate and visualized using the ChemiDoc XRS system (Bio-Rad).
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5

Immunohistochemical Analysis of HOXA1 Expression

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IHC was performed to analyze HOXA1 expression levels in xenograft tumors were assessed according to a previous study (21 (link)). Briefly, the tumor tissues were dissected and fixed in 4% paraformaldehyde at 25°C overnight, embedded in paraffin and then dissected into sections (5 µm), deparaffinized in xylene, rehydrated with graded alcohols (100, 90, 70 and 50%). Subsequently, the sections were autoclaved for 15 min at 121°C using sodium citrate buffer (0.01 M, pH 7.0) for antigen retrieval. After being blocked with 10% FBS in PBS at 37°C for 30 min, the sections were stained with an anti-HOXA1 primary antibody (1:400 dilution; product code ab230513; Abcam) at 4°C overnight. Subsequently, the sections were incubated with an HRP-conjugated goat anti-rabbit IgG secondary antibody (1:1,000 dilution; product code ab205718; Abcam) for 30 min at 37°C. Then the sections were incubated with DAB for 2 min at 25°C, counterstained with hematoxylin, dehydrated and stabilized with mounting medium (product code ab64230; Abcam). Images were acquired using an IX73 inverted microscope (magnification, ×40; Olympus Corporation). The expression levels of HOXA1 were semi-quantified using Image-Pro Plus software (Media Cybernetics, Inc.).
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6

RASSF1 Western Blot Analysis

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Whole‐cell lysates were obtained from RASSF1 and control shRNA transfected HEK293FT cells treated with tunicamycin (5 μg·mL−1) for 5 h. The cells were harvested with RIPA lysis buffer (Thermo Fisher, Waltham, MA, USA). Lysates were sonicated for 30 s, and the protein concentration was measured by DC protein assay (Bio‐Rad). Protein samples (30 μg each) were separated by 4–12% PAGE Gel (GenScript, Piscataway, NJ, USA) and then transferred onto PVDF membranes (Millipore‐Sigma, Burlington, MA, USA). Membranes were blocked with 5% nonfat milk for 60 min at room temperature and incubated overnight at 4 °C with recombinant anti‐RASSF1 rabbit monoclonal antibody (1 : 500, ab126764; Abcam) or anti‐α‐Tubulin monoclonal mouse antibody (1 : 5000, T9026; Sigma). After washing, membranes were incubated for 1 h at room temperature with horse radish peroxidase (HRP) conjugated goat anti‐rabbit IgG secondary antibody (1 : 10 000; Abcam) or goat anti‐mouse IgG secondary antibody (1 : 10 000; ThermoFisher) at room temperature. The immobilized proteins were detected using the enhanced chemiluminescence reagent plus (PerkinElmer, Waltham, MA, USA). Images were obtained with ChemiDoc™ Touch Imaging System (Bio‐Rad) and analyzed with image lab.
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7

Fiber Expression and Removal in FAdV

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The correct expression of fiber of FAdV-8b and complete removal of fiber-1 of FAdV-4 were confirmed with Western blot assay. LMH cells infected with FAdV-4, FAdV-8b or the chimeric virus rFAdV-4-fiber/8b were lysed with NP-40 lysis buffer with 1% PMSF (Thermo Fisher Scientific, MA, USA). The lysed cells were separated by 10% SDS-PAGE and electro-transferred onto a nitrocellulose (NC) membrane. The membrane was blocked in 5% skimmed milk in PBS for 2 h at 37 °C and incubated with the primary antibody against FAdV-4 fiber-1 or FAdV-8b fiber at 1:200 in PBS for 1 h at 37 °C. After washing with Tris-buffered saline with 0.1% Tween-20 (TBST) 3 times, the membrane was incubated in HRP conjugated goat anti-rabbit IgG secondary antibody (Abcam, Cambridge, UK) at 1:3000 in PBS for 1 h at 37 °C. The membrane was washed 3 times with TBST, treated with ECL substrate (Millipore, Germany), and visualized on Amersham Imager 600 RGB scanner.
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8

Protein Expression Analysis of Autophagy and Apoptosis Markers

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Total proteins were obtained using cell lysis buffer (BioVision, USA). ExKine Nuclear and Cytoplasmic Protein Extraction Kit (KTP3001, Abbkine, USA) was used to separate and extract proteins from the nucleus and cytoplasm, respectively. The protein samples were separated by 10% SDS-PAGE gels and subsequently transferred to nitrocellulose membranes. The primary antibodies including CKIP-1 (ab91489, abcam, USA), LC3 (ab51520, abcam, USA), Beclin-1 (ab207612, abcam, USA), p62 (ab109012, abcam, USA), KEAP1 (ab196346, abcam, USA), NRF2 (ab76026, abcam, USA), cleaved-caspase3 (ab2303, abcam, USA), caspase3 (ab13847, abcam, USA), cleaved-caspase7 (ab256469, abcam, USA), and caspase7 (ab32522, abcam, USA) are incubated with membrane at 4°C overnight. HRP-conjugated goat anti-rabbit IgG secondary antibody (ab6721, abcam, USA) was incubated at room temperature for 2 h. GAPDH (ab181602, abcam, USA) was presented as an internal control of total protein. Lamin B2 (ab8983, abcam, USA) was used as the internal control of nuclear protein. Enhanced chemiluminescence reagent (Thermo Fisher Scientific, Inc., USA) was used to visualize the protein bands in a BioRad ChemiDoc XRS Imaging system (Hercules, USA).
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9

Western Blot Analysis of Apoptosis Markers

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Total protein from THCA cells was extracted with the help of RIPA lysis buffer (Thermo Fisher Scientific) having protease inhibitor cocktail (Roche, Basel, Switzerland). The quantity of individual protein samples was evaluated availing a BCA test kit (Thermo Fisher Scientific). Through a 12 % SDS-PAGE, protein samples (20 μg) were separated at 150 V for 1.5 h and then transferred onto PVFD membranes (Millipore). Following blocking these with 5 % non-fat milk, the membranes were treated with primary antibodies at 4 °C overnight. The following antibodies were used in this study at a dilution of 1:1000 and were acquired from abcam, Cambridge, UK - Bcl-2 (ab32124), Bax (ab32503), EVA1A (ab216043), and GAPDH (ab9485). The membranes were then treated with hrp-conjugated goat anti-rabbit IgG secondary antibody (abcam, 1:10,000). Finally, each membrane was visualized using a chemical immunogenicity system (GE Healthcare, Chicago, IL, USA), and ImageJ software (NIH, Bethesda, MD, USA) was employed for quantitation of the intensities of the protein bands.
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10

Western Blot Analysis of HOXA1 Protein

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Total protein of tissues and cultured cells were extracted using RIPA buffer (Beyotime Institute of Biotechnology), and was quantified by a BCA Protein Quantification Kit. Total protein (20 µg) was separated using 10% sodium dodecyl sulfonate-polyacrylamide gel (SDS-PAGE; Beyotime Institute of Biotechnology). Then the proteins (20 µg/lane) were transferred onto polyvinylidene difluoride membranes (PVDF; EMD Millipore). Membranes were blocked with 5% BSA (Sigma-Aldrich; Merck KGaA) in TBS with 0.1% Tween-20 (Thermo Fisher Scientific, Inc.) for 1 h at room temperature. Next, the membranes were incubated with primary antibodies against HOXA1 (1:500 dilution; product code ab230513) and GAPDH (1:3,000 dilution; product code ab181602; both from Abcam) overnight at 4°C and then HRP-conjugated goat anti-rabbit IgG secondary antibody (1:5,000 dilution; product code ab205718; Abcam) was added for 2 h at room temperature. Finally, the protein bands were observed using an enhanced chemiluminescence reagent (EMD Millipore) and analyzed by ImageJ software (v1.8.0; National Institutes of Health).
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