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2 protocols using usp11

1

Quantitative Protein Analysis from Cells

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Total protein from tissue samples or cells was extracted and protein concentrations were quantified using a BCA assay kit (Beyotime Biotechnology, China). Equal amounts of protein were separated using SDS-PAGE and electrophoretically transferred to PVDF membranes (Millipore). Antibodies against GAPDH (AF0006, Beyotime Biotechnology), β-actin (AF0003, Beyotime Biotechnology), and β-tubulin (10094-1-AP, Proteintech) were used as loading controls. Horseradish peroxidase (HRP)-conjugated secondary antibodies were used and the protein signals were visualized using ECL detection reagents (Millipore). Antibodies used were: USP11 (ab109232, Abcam), ERK1/2 (#4695, CST), phospho-ERK1/2 (#4370, CST), p38 (#8690, CST), p-p38 (#4511, CST), JNK (#9252, CST), p-JNK (#4668, CST), HA-tag (#3724, CST), Myc-tag (05-724,Sigma-Aldrich), Flag-tag (F3165, Millipore), PPP1CA (sc-271762, Santa Cruz Biotechnology), MEK1/2 (sc-81504, Santa Cruz Biotechnology) and p-MEK1/2 (sc-81,503, Santa Cruz Biotechnology).
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2

Western Blot Analysis of Protein Expression

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Cells were lysed in RIPA buffer (50 mM Tris-HCl at pH 7.4, 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS) with cocktail (protease inhibitor). The protein supernatant was collected by centrifugation and the concentration was quantified. The proteins were transferred onto the PVDF (GE) membrane by electrophoresis and electrical transfer. Membranes were blocked with 5% non-fat milk and incubated with primary antibodies overnight at 4°C. On the second day, membranes were incubated with secondary antibodies for 1 h at RT. Images were obtained by X-ray film exposure. The antibodies used for western blot (WB) analysis were USP11 (Abcam, ab109232), LSH (Sigma, HPA063242), CYP24A1 (Sigma, HPA022261), GPX4 (Abcam, ab125066), SLC7A11 (CST, 12691), Multi-Ub (MBL, D058-3), Flag-tag (Sigma, F3165), HA-tag (CST, 3724), MYC-tag (MBL, M192-3S), His-tag (MBL, D291-3S), H3K27me3 (Abcam, ab192915), β-actin (Sigma, 4930), Tubulin (Sigma, T9026), H3 (CST, 60932), and horseradish peroxidase (HRP)-conjugated secondary antibodies (Jackson, 111-035-003; 115-035-003).
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