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4 protocols using goat α rabbit

1

Quantitative Proteomic Analysis of PMN, BALF, and Lung

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The total protein concentration of PMN lysate, BALF and whole lungs in RIPA lysis buffer (50 mM Tris, 150 mM NaCl, 1 mM EDTA, 0.5% (w/v) deoxycholic acid, 0.1% (w/v) SDS, 0.5% (v/v) Nonidet P-40, pH 8.0) has been determined by Pierce™ BCA Protein AssayKit. BALF and lysates were separated on 12% SDS-PAGE under denaturating conditions and 10–15 µg per lane were transferred to a polyvinylidene difluoride (PVDF) membrane. Free sites on the membrane were blocked by incubation with 1× Roti®block (Carl Roth). Membranes were then incubated with goat anti-mouse PR3 polyclonal antibody (1:1000), rabbit anti-mNE (1:1000, ab68672, Abcam), rabbit anti-mCatG (1:1000, ab197354, Abcam) and rabbit anti-alpha 1 antitrypsin (1:1000, ab133642, Abcam) in 1× Roti®block at 4 °C overnight. Detection of bound primary antibodies was performed by ECL after mouse α-goat IgG (1:20000, Merck), goat α-rabbit (1:40000, SigmaAldrich), goat α-mouse IgG + IgM (1:40000, Jackson ImmunoResearch)) incubation.
Mouse elastase concentrations in whole cell lysates and IL-6 levels in BAL fluid were quantified by ELISA (PicoKineTM Elisa, (EK1445), Multi Analyte ELISArray Kit (MEM-004A)) and conducted as described in the manufacturer’s recommendations.
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2

Western Blot Analysis of Parasite Proteins

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Confluent HFFs infected with tachyzoites were syringe-lysed 24 hrs postinfection and filtered, followed by centrifugation. Parasite pellets were resuspended in NuPAGE lysis buffer and boiled for 5 min. Eighty µg of parasite lysates were separated on a 4-12% Tris-acetate polyacrylamide gradient gel (Invitrogen) and transferred onto PVDF membranes. Western blotting was performed with the designated antibodies and developed with SuperSignal West Femto Sensitivity Substrate (Pierce).
Primary antibody dilutions were used as follows: rat α-HA antibody (Roche) 1:2,000; mouse α-MYC (Cell Signaling) 1:5,000; rabbit α-MYC (Thermo) 1:5,000; rabbit α-H3 (Sigma) 1:5,000; rabbit eIF2α 1:20,000 (46) , mouse α-Sag1 (Thermo Fisher)
(which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint this version posted June 12, 2020. ; https://doi.org/10.1101/2020.06.09.143586 doi: bioRxiv preprint 18 1:5,000. Secondary horseradish peroxidase (HRP)-conjugated antibody dilutions were used as follows: goat α-rat (GE Healthcare) 1:2,000; goat α-mouse (Sigma) 1:5,000; goat α-rabbit (Sigma) 1:5,000.
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3

Western Blot Analysis of Malaria Proteins

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Proteins were separated on 4–12% Bis-Tris reducing polyacrylamide gels (Life Technologies) and transferred to nitrocellulose using iBlot (Thermo Fisher Scientific). Membranes were blocked for 1 h with 5% Skim Milk in PBS + 0.1% Tween-20. Monoclonal mouse antibodies against HA (12CA5), FLAG 9H1 and FLAG (M2) were used at 1:1000. Polyclonal Antibodies against RhopH2, RhopH3 and Clag3 were generated in rabbits (GenScript) against the following antigens: RhopH3 T731-Y829, RhopH2 L20-S1378 and Clag3 K1277-H1417. Rabbit polyclonal antibodies were used at 1:500–1:1000 dilution. The following secondary HRP-conjugated antibodies were used: goat a-rat (Southern Biotech, 3030-05), goat α-mouse (Merck Millipore, AP124P), goat a-rabbit (Merck Millipore, AP187P).
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4

Antibody Characterization and Validation Protocol

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In this study, we used the following antibodies (also specified in relevant Methods sections above): Monoclonal antibodies: rat anti-HA (Roche 3F10, Cat.: 11867423001, Lot: 47877600), mouse anti-FLAG (Sigma M2, Cat.: F1804, Lot: SZCD3524), or mouse monoclonal antibodies produced in-house: anti-HA (12CA5), anti-FLAG 9H1. Polyclonal antibodies against RhopH2, RhopH3 and Clag3 were generated in rabbits by GenScript against the following antigens: RhopH3 T731-Y829, RhopH2 L20-S1378 and Clag3 K1277-H1417 and verified using indirect ELISA by the manufacturer. Rabbit anti-RON4 serum was used as published before34 (link). The following secondary Alexa 488/594 fluorophores from Life Technologies were used: chicken anti-mouse 594 (Cat.: A21201, Lot: 42099 A), donkey anti-rat 488 (Cat.: A21208, Lot: 2310102), chicken anti-rabbit 594 (Cat.: A21442, Lot: 2110863). The following secondary HRP-conjugated antibodies were used: goat a-rat (Southern Biotech, Cat.: 3030-05, Lot: G2512-M748B), goat α-mouse (Merck Millipore, Cat: AP124P), goat a-rabbit (Merck Millipore, Cat: AP187P).
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