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4 protocols using real time system

1

Total RNA Extraction and Real-Time qPCR

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Total RNA was extracted using the Total RNA Miniprep kit (Axygen, China) according to the manufacturer's instruction. First‐strand cDNA and the miRNA first‐strand cDNA were synthesized using the ReverTra Ace qPCR‐RT kit (Toyobo, Japan) and miRNA 1st Strand cDNA Synthesis Kit (by stem‐loop) (Vazyme, https://www.vazyme.com/Home.html) according to the user's manual respectively. Quantitative real‐time PCR (qRT‐PCR) analyses were performed using SYBR Premix Ex Taq (Takara, Japan) and gene‐specific primers (Table S5) on a CFX96TM Real‐Time System with snRNA U6 or Ubiquitin (UBQ) as an internal control.
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2

Extraction and Quantification of Heart and Adipose RNA

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Total RNA from heart tissues was isolated using TRI Reagent (MRC; TR118). Total RNA from adipose tissues was isolated using RNeasy Mini Kit (74104, QIAGEN). Total cDNA was obtained by reverse transcription using Improm-2 reverse transcriptase (Promega; A3802) with oligo-dT primers. Real-time PCR was performed using the TaKaRa Real Time System, according to the manufacturer’s instructions, and SYBR Premix Ex Taq (Tli RNaseH Plus; TaKaRa; RR420A). The primer sequences are shown in S1 Table.
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3

Real-Time PCR for Gene Expression Analysis

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Total RNAs from both clinical tissues and cultured cells were extracted by a QuickPrep mRNA Purification Kit (GE Healthcare, Piscataway, NJ, USA) according to the manufacturer’s protocols. The first-strand cDNA was produced by a synthesis kit (TaKaRa, Dalian, P.R. China) for reverse transcriptions. Real-time PCR was performed with the SYBR Premix Ex Taq Kit (TaKaRa) in an ABI PRISM 7900 Real-Time System. The protocol is briefly listed here: denaturation (95°C for 5 min), annealing (35 repetition of 95°C for 30 s, 60°C for 45 s, and 72°C for 60 s), and extension (72°C for 10 min). The primers were synthesized by JieLi Co. (Shanghai, P.R. China). TRIM59: 5′-TACGAGAGCAGCAGCTTGAA-3′ (forward) and 5′-ACGGGTTGAACCTCAGGAAG-3′ (reverse). GAPDH: 5′-GTGGACATCCGCAAAGAC-3′ (forward) and 5′-AAAGGGTGTAACGCAACTA-3′ (reverse). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control. All experiments were performed at least three times in triplicate.
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4

Quantitative Gene Expression Analysis in Colon Tissue

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Total RNA was extracted from colon tissue using TRIzol reagent (Takara, Shiga, Japan). The cDNA was reversely transcribed from 1 μg of RNA using the PrimeScript 1st Strand cDNA Synthesis Kit (Takara, Japan).
Relative gene expression levels were determined by real-time quantitative PCR (RT-qPCR) on a Bio-Rad Real-time System using TB Green Premix Ex Taq (Tli RNaseH Plus; Takara, Japan) and specific primers. The RT-qPCR temperature program was 95°C for 30 s, 95°C for 10 s, 55°C for 10 s, and 72°C for 30 s for a total of 40 cycles. The data were normalized to the GAPDH control and analyzed by the 2 -ΔΔCt method. The primer sequences are shown in Table 1.
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