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11 protocols using tetracycline

1

Antibiotic Susceptibility of Probiotic Strains

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The antibiotic susceptibility test was performed following the disc diffusion method [24 (link), 25 (link)], as described before by Halder and Mandal [22 (link)], using MRS agar and approximately108 CFU inoculum from the probiotic strains. The antibiotic discs (Bioanalyse, Turkey) used were Gentamicin (CN: 10-µg/disc), Tetracycline (TE: 30-µg/disc), Chloramphenicol (C: 30-µg/disc), Clindamycin (DA: 2-μg/disc), Erythromycin (E: 15-µg/disc), Kanamycin (K: 30-µg/disc), Streptomycin (S: 10-µg/disc) and Vancomycin (VA: 30-µg/disc). The determined zone diameter of inhibition (ZDI) values were interpreted according to the cut-off points given by the CLSI document [26 ].
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2

Spectroscopic Characterization of Antimicrobial Compounds

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All melting points were determined using an Electrothermal Capillary melting point apparatus and are uncorrected. Infrared (IR) spectra were recorded as thin film (for oils) in NaCl discs or as KBr pellets (for solids) with a JASCO FT/IR-6100 Spectrometer (Japan) and values are represented in cm1. 1H NMR (500 MHz) and 13C NMR (125 MHz) spectra were recorded on a Jeol ECA 500 MHz spectrometer (Japan) using TMS as internal standard and chemical shift values were recorded in ppm on the δ scale. Silica gel TLC (thin layer chromatography) cards from Merck (silica gel precoated aluminium cards with fluorescent indicator at 254 nm) were used for thin layer chromatography. Visualization was performed by illumination with UV light source (254 nm). Column chromatography was carried out on silica gel 60 (0.063–0.200 mm) obtained from Merck. The mobile phase consisted of chloroform or chloroform/ethyl acetate 1/1 v/v. Tetracycline, gentamicin and ofloxacin standard antibiotic discs were purchased from Bioanalyse®, Turkey.
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3

Antimicrobial Susceptibility Testing of E. coli

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Antimicrobial susceptibility was performed on Mueller–Hinton agar by standard disk diffusion procedure as described by the Antibiogram Committee of the French Society for Microbiology [24 ]. In this assay, a standard 0.5 McFarland inoculum was prepared and swabbed onto the surface of Muller-Hinton plates. Filter papers impregnated with a standardized concentration of antibiotic agent were placed on the agar surface. Antibiotics tested were as follows: amoxicillin–clavulanic acid (AMC), cefoxitin (FOX), cefotaxime (CTX), ceftazidime (CAZ), aztreonam (ATM), cefepime (FEP), imipenem (IMP), tobramycin (TOB), gentamicin (GEN), nalidixic acid (NAL), ciprofloxacin (CIP), tetracycline (TET), and trimethoprim-sulfametoxazole (STX) (Bioanalyse). In the same conditions, E. coli ATCC 25922 was used as a control strain. After incubation at 37 °C for 24 h, the diameter of the zone of inhibition around the disc was measured. The results were then interpreted according to the AC-FSM breakpoints [24 ]. E. coli isolates were finally classified as resistant (R), susceptible (S), or intermediate (I) for each of the antimicrobials tested.
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4

Antibiotic Susceptibility of E. coli Isolates

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The susceptibility of the confirmed E. coli isolates to thirteen antibiotics was examined according to the Kirby–Bauer disk diffusion method [27 ]. The antibiotics were obtained from Bioanalyse (Ankara, Turkey) and included ampicillin (10 μg), amoxicillin (25 μg), amoxicillin-clavulanic acid (30 μg), cephalexin (30 μg), ceftriaxone (30 μg), gentamicin (10 μg), kanamycin (30 μg), tetracycline (30 μg), chloramphenicol (30 μg), ciprofloxacin (5 μg), levofloxacin (15 μg), trimethoprim-sulphamethoxazole (25 μg), and nitrofurantoin (300 μg). For the test, fresh culture suspensions were standardised to 0.5 McFarland (equivalent to 8 log cfu/mL). Using sterile cotton swabs, sterile prepoured plate count agar (PCA) (Laboratorios CONDA, Madrid, Spain) plates were swabbed with standardised culture suspensions and incubated at 37°C for 1 h. Antibiotic discs were then placed on the agar surface and incubated at 37°C for 24 h. The diameter of the inhibition zone was measured in mm (Figure 1). Isolates were categorized as resistant, intermediate, or susceptible according to the guidelines of the Clinical and Laboratory Standard Institute [27 ]. The multiple antibiotic resistance (MAR) index was computed as a/b, where a is the number of antibiotics the isolate was resistant to and b is the total number of antibiotics to which the isolate was exposed [28 (link)].
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5

Antibacterial Screening of β-Lapachone

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β-Lap was purchased from Solarbio Life Science (Beijing, China) and dissolved in dimethyl sulfoxide (DMSO). Gram’s crystal violet, a bacteriological stain, was obtained from TITAN BIOTECH. Phosphate buffered saline (PBS) tablets were obtained from Sigma Aldrich®, Dorset, UK. Methanol (≥99.8%) was purchased from Sigma-Aldrich® GmbH Chemie, Steinheim, France. Acetic acid (≥99.8%) was purchased from Sigma-Aldrich® GmbH Chemie, Steinheim, Germany. Six antibiotics belonging to different classes and potencies were purchased from different pharmaceutical companies. Gentamicin (10 µg) from Becton Dickinson, NJ, USA, vancomycin (30 µg), amikacin (30 µg), tetracycline (30 µg), ciprofloxacin (5 µg) from Bioanalyse® Ankara, Turkey, and amoxicillin (30 µg) from Oxoid™ Basingstoke, Hampshire, UK.
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6

Antibiotic Resistance Profile Testing

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To determine antibiotic resistance profiles, the disk diffusion method was applied following the methodology described by European Committee on Antimicrobial Susceptibility Testing (EUCAST). Four antibiotics, representing distinct classes and modes of action, were selected (Gentamicin 10 µg, Amoxicillin 25 µg, Chloramphenicol 30 µg, Tetracycline 30 µg (Bioanalyse, Ankara, Turkey). According to EUCAST breakpoints [36 ] zones of inhibition (in mm) were determined.
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7

Antimicrobial Susceptibility Testing of ESBL-Producing K. pneumoniae

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The ESBL-producing K. pneumoniae isolates were tested for
antimicrobial susceptibility testing (AST) using disk diffusion technique
according to the Clinical and Laboratory Standards Institute (CLSI)
instructions9. Antimicrobials were classified as follows: aztreonam (ATM, 30 μg),
gentamicin (CN, 10 μg), ciprofloxacin (CIP, 5 μg), ceftazidime (CAZ, 30 μg),
levofloxacin (LEV, 5 μg), amoxicillin/clavulanate (AMC, 30 μg), trimethoprim
(TMP, 5 μg), norfloxacin (NOR, 10 μg), cefotaxime (CTX, 30 μg), nitrofurantoin
(F, 300 μg), imipenem (IPM, 10 μg), chloramphenicol (C, 30 μg), tetracycline
(TE, 30 μg), and ceftriaxone (CRO, 30 μg) (Bioanalyse, Turkey). MDR isolates
were determined according to the previous definition (resistance to at least one
member of three antibiotics classes)10. Escherichia coli ATCC 25922 and K.
pneumonia
e ATCC 700603 were used as quality control strains.
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8

Antimicrobial Susceptibility Testing of Bacterial Isolates

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Antimicrobial susceptibility of the isolates was determined by disk diffusion
method for the following antibacterial agents; erythromycin (15 µg), gentamicin
(120 μg), tetracycline (30 μg), ampicillin (10 µg), amoxicillin-clavulanic
(30 µg), Cefepime (30 µg), vancomycin (30 μg), teicoplanin (30 μg), linezolid
(30 μg), ciprofloxacin (5 μg), Imipenem (10 µg), and rifampin (5 μg)
(Bioanalyse, Turkey). Muller-Hinton agar plates were inoculated with 0.5
McFarland standard suspension of the strains, antimicrobial disks were placed
into plates and then were incubated at 37°C for 24 hours. Minimum inhibitory
concentrations (MICs) of vancomycin and erythromycin were determined by the agar
dilution method. Zone diameters were assessed according to the Clinical
Laboratory Standard Institute guidelines.20
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9

Antibiotic Susceptibility of L. nagelii

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Antibiogram tests were performed to screen resistance or sensitivity of AGA58 against commonly used antibiotics. Commercially available antibiotic disks [methicillin, vancomycin, amikacin, kanamycin, azithromycin, tetracycline, penicillin G (Bioanalyse, Yenimahalle, Ankara, Turkey); ampicillin, oxacillin, carbenicillin, amoxicillin, streptomycin, erythromycin, rifampicin (Oxoid, Basingstoke, Hampshire, UK)] were utilized to determine antibiotic susceptibility of L. nagelii AGA58 . The disk diffusion assay was performed per modified Kirby-Bauer method [29] (link). Interpretation of inhibition zone (mm) results was performed per Clinical and Laboratory Standards Institute's performance standards for antimicrobial testing [30] .
Inhibition zone less than or equal to 14 mm was noted resistant (R). Inhibition zone greater than 20 mm was regarded sensitive (S). Zones between 15 and 19mm were recorded as semi-sensitive or intermediate (I).
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10

Antibiotic Resistance Profiling of L. plantarum

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Antibiogram assays were conducted to nd out the resistance or sensitivity of the DY46 strain against commonly used antibiotics. Ready to use commercial antibiotic disks (methicillin, vancomycin, amikacin, kanamycin, azithromycin, tetracycline, penicillin G (Bioanalyse); ampicillin, oxacillin, carbenicillin, amoxycillin, streptomycin, erytromycin, rifampacin (oxoid)) were employed for antibiotic susceptibility testing of L. plantarum DY46. The application of disk diffusion assay was performed according to a modi ed Kirby-Bauer method (Sharma et al. 2017 (link)). Interpretation of inhibition zone (mm) results was carried out with regard to Clinical and Laboratory Standards Institute's performance standards for antimicrobial testing (CLSI M100-S22, 2012). Results with an inhibition zone less than or equal to 14mm were noted resistant (R). Additionally, inhibition zones greater than 20 mm were considered sensitive (S) and between 15-19 mm were accepted as semi-sensitive or intermediate (I).
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