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Ultrascan 2k 2k ccd camera

Manufactured by Ametek
Sourced in United States

The Ultrascan 2k × 2k CCD camera is a high-resolution imaging device designed for laboratory applications. It features a 2048 × 2048 pixel sensor, providing a large field of view and high-resolution image capture capabilities. The camera is capable of capturing images with a wide dynamic range and high sensitivity, making it suitable for various scientific and research purposes.

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8 protocols using ultrascan 2k 2k ccd camera

1

Transmission Electron Microscope Tomography

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Single-axis tilt series were recorded on a JEM 2100 or a JEM 1400 transmission electron microscope (JEOL) operated at 200 or 120 kV, respectively. The tomography plug-in of the Digital Micrograph software (Gatan) was used to acquire images automatically every 2° over a ±60° range using an Ultrascan 2K × 2K CCD camera (Gatan) at a pixel size of 1.01 nm (JEM 2100) or a Gatan Orius SC1000B camera at a pixel size of 0.64 nm (JEM 1400) at a magnification of ×10,000. Tomograms were reconstructed with IMOD by the simultaneous iterative reconstruction technique (SIRT). The nominal resolution in our tomograms is estimated at about 4 nm according to the Crowther criterion62 (link).
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2

VLP-Based Vaccine Immunogen Conjugation

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SpyCatcher-AP205 VLPs were expressed in bacteria and purified as described (48 (link), 88 (link)). SpyTagged SOSIP immunogens were incubated at a 2 to 3–fold molar excess with SpyCatcher-VLPs for 12 to 24 hours at room temperature in phosphate-buffered saline (PBS). Conjugated VLPs were separated from free Env trimers by SEC on a Superdex 200 (fig. S7D) or Superose 6 (fig. S7E) column. Conjugation of Env trimers was verified by SDS-PAGE (fig. S7C). Immunogen concentrations for immunizations were estimated by comparing to known amounts of the analogous unconjugated Env trimer on a SDS-PAGE gel.
Conjugated VLPs were examined by nsEM (fig. S7A and D). Purified VLPs were diluted to about 10 μg/mL immediately before adding 3 μL to a glow-discharged ultrathin C film on a holey carbon support film, 400 mesh, Cu grid (Ted Pella). After blotting, the grids were stained by uranyl acetate and then imaged using a FEI Tecnai T12 transmission electron microscope operating at 120 keV with a Gatan Ultrascan 2k × 2k CCD camera. Each image was collected using a 1 second exposure at about 2 μm defocus and 42,000× magnification, resulting in 2.5 Å per pixel.
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3

Negative Staining of Mega GVs

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GV samples were diluted to OD500 ∼ 0.2 in 10 mM HEPES buffer and spotted on Formvar/Carbon 200 mesh grids (Ted Pella, Redding, CA), which were rendered hydrophilic by glow discharging (Emitek K100X). Unclustered Mega GVs were negatively stained using 2% uranyl acetate. Images were acquired using the Tecnai T12 LaB6 120 kV transmission electron microscope (TEM) equipped with a Gatan Ultrascan 2k × 2k CCD camera.
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4

Structural Analysis of Rea1 AAA+ ATPase

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Rea1 or the Rea1_ΔAAA2L-H2α deletion mutant in buffer B without glycerol were diluted to a final concentration of 45 nM. AMPPNP, ATP, or ADP were added to reach a final concentration of 3 mM. Negative-stain electron microscopy was performed on plasma-cleaned carbon film on 400-square-mesh copper grids (Electron Microscopy Sciences). 3 μl sample was applied to the grids that were subsequently stained with 2% (w/v) uranyl acetate. Data collection was done on an FEI tecnai G2 operated at 200kV and equipped with a Gatan Ultrascan 2K*2K CCD camera. Data were collected at ∼1 μm underfocus, with a pixel size of 3.629 Å and an estimated dose of 25 electrons / Å2 during 1 s exposures. SerialEM was used for semiautomatic data acquisition. Around 8000 particles per data set were manually picked and processed with Relion using standard procedures. In order to not bias the orientation of the linker with respect to the AAA+ ring, the initial model consisted of the low pass filtered NTD-AAA+ ring map rescaled to the correct pixel size.
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5

Ultrastructural Analysis of Porcine Trachea

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Tracheal segments (<1 mm3) from newborn pigs were cut, briefly rinsed in cold 1× PBS, and fixed in glutaraldehyde fixation buffer (2.5% glutaraldehyde, 0.1 M sodium cacodylate). Tissues were next postfixed in osmium tetroxide (2%), and en-bloc stained with uranyl acetate (2.5%). Then, tissues were dehydrated through a graded ethanol series, infiltrated with Eponate 12, and polymerized at 60 °C for 24 h. Next, 70-nm-thick sections were cut and counterstained with 5% uranyl acetate and Reynold’s lead citrate. Images were taken using a transmission electron microscope (JEOL, JEM1230) with a Gatan UltraScan 2k × 2k CCD camera.
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6

Cryo-Electron Tomography of Actin Structures

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Tilt series were acquired on a transmission electron microscope (JEM-2100; JEOL) operated at 200 kV. Data were automatically acquired using digital micrograph software. Typically, the tilt ranged between −60 and +60 with 2° angular increments. Images were recorded mainly at a nominal magnification of 10,000 on an Ultrascan 2k × 2k CCD camera (Gatan) with defocus set to −4 µm. Alignments and weighted back-projection-based reconstructions of raw tilt series, using anti-actin immunogold particles as fiducial markers, were computed with the IMOD software package (Kremer et al., 1996 (link)). Three-dimensional reconstructions were visualized with UCSF Chimera (Pettersen et al., 2004 (link)).
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7

Transmission Electron Microscopy Sample Preparation

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After fixation with 2.5% glutaraldehyde in 0.1 M sodium cacodylate, the cell monolayers were treated with 1% osmium tetroxide containing 1.5% potassium ferrocyanide followed by 2.5% uranyl acetate. Samples were dehydrated using increasing concentrations of ethanol, and embedded in Eponate 12 resin (Ted Pella, Redding, California). Resin was polymerized in a 65°C oven overnight. Ultrathin sections (70–90 nm) were cut with a Leica UC6 ultramicrotome (Leica Microsystems). Sections were collected on copper grids and sequentially stained with 5% uranyl acetate and Reynold lead citrate. The sections were viewed using a Jeol 1230 transmission electron microscope (Jeol USA, Peabody, Massachusetts) equipped with a Gatan Ultrascan 2k × 2k CCD camera.
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8

Cryo-TEM Tilt Series Reconstruction

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Tilt series were acquired on a JEOL JEM-2100 transmission electron microscope operated at 200 kV. Data were automatically acquired using Digital Micrograph software.
Typically, the tilt ranged between -60 and + 60 with 2° angular increments. Images were recorded at a nominal magnification of 5,000 X or 10,000 X on a Gatan Ultrascan 2K×2K CCD camera with a defocus range of -4 µm to -8 µm. Alignments and weighted backprojection-based reconstructions of raw tilt series, using patch tracking algorithm, were computed with IMOD software package [29] . Three-dimensional reconstructions were visualised with UCSF Chimera [30] using the surface or solid rendering mode.
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