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2 630 protocols using lsm 510

1

Mitochondrial and Lysosomal Imaging by Confocal Microscopy

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As described, the cells grown on chamber slides were transfected with the plasmid, followed by immunofluorescence assay under a confocal laser scanning microscopy (LSM510; Zeiss, Germany). Further, they were cultured with cell-permeant fluorophore MitoTracker Green (Invitrogen/Molecular Probes) or LysoTracker Red (Invitrogen/Molecular Probe) to label mitochondria and lysosomes, and were visualized under a confocal laser scanning microscopy (LSM510; Zeiss, Germany).
The cells cultured on slides were fixed with 4% paraformaldehyde, washed, permeabilized with 0.3% Triton X-100, blocked with 5% BSA, and incubated with primary antibody at 4 °C overnight, and were then incubated with the appropriate secondary antibody. The nuclei were counterstained with 4, 6-diamidino-2-phenylindole (DAPI) (Yeasen, Shanghai, China). Images were taken using a confocal laser scanning microscopy (LSM510; Zeiss, Germany) and the quantification of these images (at least 10 cells/sample) was done using ImageJ software. The mitochondrial network morphology was analyzed using an ImageJ macro tool as described previously55 (link).
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2

Imaging Cells under Variable Oxygen Conditions

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Experiments were carried out using either culture medium or physiological saline solution (PSS) containing [in mM]: 120 NaCl, 5 KCl, 1 MgCl2, 2 CaCl2, 0.42 Na2HPO4, 0.44 NaH2PO4, 24 NaHCO3, and 10 Glucose. Fluorescence signal of Perceval/PercevalHR and pHRed was measured with LSM510 (Carl Zeiss AG, Oberkochen, Germany), which allowed control of CO2, humidity and temperature while environmental O2 can also be changed to create hypoxic conditions. Manipulating O2 tension in the custom made micro-imaging chamber (atmospheric gas) was achieved by an O2 controller (# 0508.000, PeCon GmbH, Germany). This system has been specifically designed to image cultured cells under conditions of varying O2 tension, achieved by changing the O2 level in the atmosphere of the micro-imaging chamber. Images in the experiments of PercevalHR calibration were taken using LSM510 high speed multiphoton confocal laser scanning microscope (Carl Zeiss AG, Oberkochen, Germany). Software analysis of the data from LSM510 and LSM510 Multiphoton were carried out by region of interest analysis using AIM software, version 3.2 SP2 (Carl Zeiss AG).
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3

Immunofluorescence Imaging of Vascular Smooth Muscle Cells

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Freshly isolated VSMCs were fixed with 4% paraformaldehyde (Sigma-Aldrich) for 10 min, washed with PBS, and permeabilized with PBS containing 0.1% Triton X-100 for 20 min at room temperature. Cells were incubated with PBS containing 1% bovine serum albumin for 1 h at room temperature and then were incubated with primary antibodies in PBS containing 1% bovine serum albumin overnight at 4°C. In control experiments, cells were incubated without the primary antibody. The cells were washed and incubated with secondary antibodies conjugated to a fluorescent probe. Unbound secondary antibodies were removed by washing with PBS, and nuclei were labeled with DAPI mounting medium (Sigma-Aldrich). Cells were imaged using a Zeiss LSM 510 laser-scanning confocal microscope. The excitation beam was produced by an argon (488 nm) or helium/neon laser (543 and 633 nm) and delivered to the specimen via a Zeiss Apochromat ×63 oil-immersion objective (numerical aperture, 1.4). Emitted fluorescence was captured using LSM 510 software (release 3.2; Carl Zeiss). Two-dimensional images cut horizontally through approximately the middle of the cells were captured (1024 × 1024 pixels). Raw confocal imaging data were processed and analyzed using Zeiss LSM 510 software. Final images were produced using PowerPoint (Microsoft XP).
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4

Comprehensive Imaging of PSD95 Synaptic Markers

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Low magnification brain section scans were acquired with a Zeiss Axio Scan Slide Scanner (Carl Zeiss) with a ×20 plan-apochromat lens at 488 nm excitation with the same 500 ms exposure time. Hemi-coronal section images were background and contrast adjusted to provide reasonable comparison of expression. Both were compared with a WT negative control brain. Maps of PSD95-eGFP and PSD95-mEos2 were captured using x40 magnification confocal images with the Leica SP5 with individual images stitched together using Adobe Photoshop. High magnification x63 confocal images of PSD95-eGFP and Synaptophysin were captured using a Zeiss LSM510 with 46 × 46 × 130 nm pixel dimensions in accordance with Nyquist sampling capturing six serial z-plane acquisitions. Images were subsequently deconvolved with Huygens deconvolution software prior analysis. High magnification confocal images of PSD95-mEos2 and Synaptophysin were captured using the Leica SP5 at 20 × 20 × 130 nm pixel dimensions with six serial z-plane acquisitions. Low magnification images of dye filled cells in PSD95-eGFP sections were captured using a Zeiss LSM 710 with a x20 plan-apochromat lens. High magnification images of PSD95 antibody stains were captured using a Ziess LSM 510 with a x63 plan apochromat lens.
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5

Confocal Imaging of Drosophila Larval Cephalic

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Dissected third instar larval cephalic complexes were mounted in PBS and imaged directly. All confocal images were acquired using a Zeiss LSM 510 or 710 system. Stacks of 20–40 0.5-µm confocal sections were generated; image analysis was performed using Zeiss LSM 510, ImageJ (NIH) or Imaris 4.0 (Bitplane) software. The results for each section were assembled as a separate channel of the stack. Time-lapse recordings were carried out on 12 hr after egg lay (AEL) embryos raised at 20°C using an inverted Zeiss LSM 510 confocal microscope. To increase signal strength, the pinhole was opened to 1.3 (z-section thickness 0.6 µm), and z-stacks of 12 sections were acquired once per minute. To adjust for focus drift, which is mainly caused by rotation of the embryo, the z-stack coordinates were adjusted at various timepoints without disrupting the continuity of the movie. Between 5 and 7 movies were captured per genotype, each 80–110 min in duration.
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6

Optimized Transfection Protocol for Cell Lines

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Transfection was performed as described previously 15 (link). For each well in a 24-well plate, 1 μg DNA plasmid was combined with 2 μl lipofectamine 2000 in serum-free DMEM. Mixture was incubated at room temperature for 20 min., and another 200 μl serum-free DMEM was added. Cell cultures were left for 1 hr in this transfection medium and then it was replaced with fresh culture medium. Fluorescence was detected under fluorescence microscopy (Olympus IX81; 60×; NA = 1.45) or Zeiss Laser Scanning Confocal Microscope (Zeiss Germany LSM 510; 100×; NA = 1.30; Zeiss LSM 510; (Zeiss LSM 510; 100×; NA = 1.30; Carl Zeiss Inc., Jena, Germany).
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7

Imaging Transgenic Embryos and Heart Structures

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WISH preparations were mounted in glycerol and imaged using a Nikon SMZ1500 microscope with an Insight Firewire 2 digital camera and SPOT advanced imaging software. Transgenic embryos, embryonic hearts and cultured heart clusters were mounted in low melting agarose and imaged using the Zeiss LSM510 or LSM800 confocal microscope with Zen software. Images were analyzed in ImageJ and Adobe Photoshop. Epicardial cell number was counted manually at 4 dpf using the Zeiss LSM510 confocal microscope. 4% tricaine (Sigma) was added immediately before counting to stop heart beating. At least 10 embryos were counted for each biological replicate.
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8

Measuring Intracellular Calcium Dynamics

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Primary zebrafish cells were grown on Poly-L-lysine coated glass
coverslips and loaded with mCa2+ sensor Rhod-2 (2
μM) for 45 min in extracellular media (ECM-120mM NaCl, 5mM KCl, 1mM
KH2PO4, 0.2mM MgCl2, 0.1mM EGTA, 20mM
HEPES, pH 7.4). Cells were washed and imaged in ECM using Carl Zeiss LSM510
confocal live cell imaging system using the 560 nm excitation (Ex) laser and
580 nm emission (Em) spectra is collected. Ionomycin was added at indicated
time points to increase cCa2+ levels. For
cCa2+ measurements, primary hepatocytes were grown
on 25-mm glass coverslips and transduced with GCaMP6 encoding adenovirus.
Coverslips were mounted in an open perfusion micro-incubator (PDMI-2;
Harvard Apparatus) at 37 C and imaged using the Carl Zeiss LSM510 confocal
live cell imaging system using the Ex-488 nm and Em-510 nm. After 1 min of
baseline recording, vasopressin (100nM) or thapsigargin (2 μM) was
added, and confocal images were obtained every 3 s at 488-nm excitation
using a 40x oil objective. Images were analyzed and quantitated using ZEN
2010 and ImageJ software.
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9

Measuring Cardiomyocyte ROS Production

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A cross-sectional area of each of the isolated single PV cardiomyocytes was imaged using a confocal laser scan microscope (Zeiss LSM 510), and the acquired images were processed using ImageJ measurement tools. We used CellROX Green (Life Technologies, Grand Island, NY, USA) to assess cytosolic ROS production in the freshly isolated control and MIF-treated PV cardiomyocytes at 1 Hz pacing. The measurements were performed using a laser-scanning confocal microscope (Zeiss LSM 510) and an inverted microscope (Axiovert 100) with a 63 × 1.25 numerical aperture oil immersion objective, as described previously.7 (link) Freshly isolated PV cardiomyocytes were maintained in normal Tyrode’s solution (NaCl, 137 mM; KCl, 5.4 mM; CaCl2, 1.8 mM; MgCl2, 0.5 mM; HEPES, 10 mM) with 10 µM CellROX Green fluorescent dye. The CellROX Green dye was excited at 488 nm, and fluorescent signals were acquired at wavelengths of >505 nm in the XY mode of the confocal system. The acquired fluorescent images were analysed using Image-Pro Plus 6.0 and Sigma Plot 12 software, as described previously.9
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10

Whole-mount Imaging of Ganglia with Confocal Microscopy

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Image stacks of whole-mounts were captured with a confocal laser scanning microscope (LSM 510; Carl Zeiss, Germany; Imaging Facility Biocenter Cologne) equipped with Plan-Neofluar 10x (0.65 NA) and Plan-Apochromat 20x (0.75 NA) objectives. FDA, TRDA, and DyLight 633 were imaged with 488, 543, and 633 nm excitation, respectively. Emission of TRDA was collected through a 560 long-pass (LP) filter or a 560–630 nm band-pass (BP) filter for double or triple labeled ganglia with DyLight 633 and FDA. For emission of FDA and DyLight 633 a 505–530 BP and a 650 LP filter was used, respectively. For documentation, optical sections were scanned in intervals between 1 and 5 μm with the Zeiss LSM 510 microscope. In several CRG and GNG images, the ganglion outline was captured by scanning the autofluorescence of the tissue basic with 488 nm excitation. Projections and depth colour-coded images were generated with the Zeiss LSM Image Browser (v4.2.0.121).
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