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10 protocols using carbon formvar coated copper grids

1

Visualizing Platelet-derived Extracellular Vesicles

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Platelet-derived EVs were fixed in 2% formaldehyde (Sigma-Aldrich, Saint Louis, MI, USA) solution. Fixed EVs were set on copper formvar-carbon-coated grids (Ted Pella, Redding, CA, USA) during 20 min and washed with PBS. Then, the grids with the EVs on it were incubated with 1% glutaraldehyde (Sigma-Aldrich) for 5 min and washed with deionized water. The grids were stained for 1 min with 2% uranyl acetate (Electron Microscopy Sciences Hatfield, PA, USA) and washed with PBS. Images were taken using a TEM-H600 (Hitachi, Tokyo, Japan) at 50 kV.
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2

Transmission Electron Microscopy of Small Extracellular Vesicles

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Procedures were performed essentially as described (Raposo et al., 1996 (link); Hurbain et al., 2017 (link)).
For transmission electron microscopy (TEM), sEV preparations were loaded on copper formvar/carbon coated grids (Ted Pella). Fixation was performed with 2% paraformaldehyde in 0.1 M phosphate buffer (pH 7.4), followed by a second fixation with PBS 1% glutaraldehyde in PBS. Samples were stained with 4% uranyl acetate in methylcellulose.
For immunolabeling electron microscopy (IEM), sEV preparations were loaded on grids and fixed with 2% paraformaldehyde in 0.1 M phosphate buffer (pH 7.4). Immunodetection was performed with a mouse anti-human CD63 primary antibody (Abcam ab23792). Secondary incubation was next performed with a rabbit anti mouse Fc fragment (Dako Agilent Z0412). Grids were incubated with Protein A-Gold 10 nm (Cell Microscopy Center, Department of Cell Biology, Utrecht University). A second fixation step with 1% glutaraldehyde in PBS was performed. Grids were stained with uranyl acetate in methylcellulose.
All samples were examined with a Tecnai Spirit electron microscope (FEI, Eindhoven, The Netherlands), and digital acquisitions were made with a numeric 4k CCD camera (Quemesa, Olympus, Münster, Germany). Images were analyzed with iTEM software (EMSIS) and statistical studies were done with Prism-GraphPad Prism software (v8).
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3

Transmission Electron Microscopy of Viral Cultures

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For transmission electron microscopy, samples were prepared on 400-mesh carbon-Formvar-coated copper grids (Ted Pella, Redding, CA, USA). Culture supernatants were generated by centrifugation at 6,000g for 5 minutes. Grids were placed, carbon-Formvar down, on a 5-μl droplet of culture supernatant for 2 minutes. Samples were removed from the grid by wicking. Grids were then stained for 15–60 seconds on 5 μl of 2 per cent uranyl acetate stain (pH 3). Grids were allowed to dry in air overnight and were examined within 48 h of staining. Images were obtained at magnifications ranging from 8,500 to 34,000 on an FEI Tecnai F20 transmission electron microscope (TEM) (FEI Inc. Hillsboro, OR, USA).
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4

Negative Staining of Protein Samples

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Carbon-Formvar coated copper grids (300 mesh; Ted-Pella, Inc) were used without or with glow-discharging using plasma cleaner (Quorum technologies) just before use. 2–5 μL of purified protein (Figure 2B lane 7 or Figure 3C lane 6) was applied to grids and allowed to stand at room temperature for 30 s. Excess buffer was blotted and 2 - 4 μL stain [0.5% w/v uranyl acetate in water] was applied to the grid and immediately absorbed from bottom. Grids were scanned and imaged using transmission electron microscope (JEM-2200FS, Jeol Ltd.). Images were visualized using ImageJ software (Schneider et al., 2012 (link)).
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5

Single-Axis Tilt Electron Tomography of Amyloids

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Carbon–formvar-coated copper grids (200 mesh, Ted Pella) were coated with 0.1% (w/v) poly-l-lysine (Sigma) for 10 min and blotted to remove residual liquid. After drying, the grids were incubated with a droplet of sample for 5 min and subsequently washed with distilled water for 5 s, followed by 2% uranyl acetate staining. Afterwards, the grids were treated with 10 nm gold particles (741957, Sigma Aldrich) in water (1:1) and blotted. Single-axis tilt electron tomography was recorded from −60° to 60° using tilt increments of 2° using a transmission electron microscope (FEI, Tecnai F20) at 200 kV equipped with a 4,096 × 4,096 pixel CMOS camera (TemCam-F416, TVIPS). The image stack was generated from tilt images and subjected to tomographic reconstructions using the weighted back-projection algorithm in IMOD (v.4.11.2). The 3D model of amyloids was manually traced from the virtual sections of the tomogram.
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6

Characterization of Recombinant Protein Particles

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The particles formed by the recombinant protein after refolding were examined using a transmission electron microscope and atomic force microscope. Electron microscopy was performed on a JEM 1400 instrument (JEOL, Tokyo, Japan). The purified proteins were placed on carbon-formvar-coated copper grids (TED PELLA, Redding, CA, USA) and stained with 1% (w/v) uranyl acetate in methanol. Particle sizes (n = 20) in digital photographs were determined using the ImageJ software [62 (link)].
Atomic force microscopy was performed using an Integra Prima microscope and Nova SPM software (NT-MDT, Moscow, Russia). The scanning was performed in the semi-contact mode using gold cantilever NSG01 (NT-MDT). Particle sizes (n = 20) were determined using the NT-MDT Nova v. 1.06.26 software supplied with the instrument.
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7

TEM Sample Preparation and Imaging

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For transmission electron microscopy, samples were prepared on 400-mesh carbon-Formvar-coated copper grids (Ted Pella, Redding, CA, USA). Grids were placed, carbon-Formvar down, on a 5 μL droplet of culture supernatant for 2 min. Culture supernatants were generated by centrifugation at 3000× g for 5 min. Samples were removed from the grid by wicking. Grids were then stained for 15–60 s on 5 μL of either 2% uranyl acetate stain (pH 3) or 2% sodium phosphotungstate tribasic hydrate stain (pH 6). Phosphotungstate stain was made freshly every week to ensure that the solution did not disassociate. Grids were allowed to dry in air overnight and were examined within 48 h of staining. Images were obtained at 8500 to 34,000 magnification on an FEI Tecnai F20 transmission electron microscope (TEM) (FEI Inc. Hillsboro, OR, USA). Grids were analyzed by examining randomly selected grid squares. Images were obtained with a BM UltraScan camera and stored in digital micrograph 3 (Gatan, Pleasanton, CA, USA) and TIFF formats.
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8

TEM Imaging of Nanoparticles

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The TEM was done using a JEOL 100CX operated at 100 kV with samples drop-cast on carbon–Formvar-coated copper grids (Ted Pella, Inc.). The excess of water was removed by touching the edge of the grids with a small piece of filter paper (Whatman). The grids were allowed to dry at room temperature followed by staining with a drop of 2 wt % phosphotungstic acid (freshly prepared in Nano pure water and filtered through a 0.2 μm filter membrane). After 2 min, excess staining agent was removed by blotting with filter paper, and the grids were further dried at ambient temperature for 15 min and used for TEM imaging.
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9

Multimodal Characterization of Purified Proteins

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Analysis of particle size by dynamic light scattering method was performed using a Zetasizer NanoS90 particle size analyzer (Malvern).
Atomic force microscopy was performed using an Integra Prima microscope and Nova SPM software (NT-MDT, Moscow, Russia). The scanning was performed in semi contact mode using gold cantilever NSG01 (NT-MDT).
Electron microscopy was performed on a JEM 1400 instrument (JEOL, Tokyo, Japan). Purified proteins were placed on carbon-formvar-coated copper grids (TED PELLA, Redding, CA, USA) and stained with 1% (w/v) uranyl acetate in methanol. The average size of the particles was determined using 10 particles.
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10

Electron Microscopy Protein Sample Prep

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Electron Microscopy (TEM): Carbon-Formvar coated copper grids (300 mesh; Ted-Pella, Inc) were used without or with glow-discharging [two rounds of 15 mA current for 25 seconds using plasma cleaner (Quorum technologies) just before use]. Samples were prepared by applying 2-5 µL of purified protein to grids and allowed to stand at room temperature for at least 30 seconds to facilitate settling down of the filaments.
Excess buffer was blotted using Whatman filter paper (Sigma-Aldrich). 2-4 µL stain (0.5 % w/v uranyl acetate) solution was applied to the grid and immediately absorbed from bottom using blotting paper so as to prevent absorption of the stain by protein. The grids were allowed to dry at room temperature in a dust-free environment for at least 2 hours. Dried grids were stored in a grid storage box in a dry, dust-free environment until observation in a TEM. Grids were scanned using transmission electron microscope (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission.
The copyright holder for this preprint this version posted October 30, 2021. ; https://doi.org/10.1101/2021.10.30.466559 doi: bioRxiv preprint 11 (JEM-2200FS, Jeol Ltd.) initially at low magnification and protein imaged at higher magnifications.
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