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Ultrasonic cell disruptor

Manufactured by Emerson
Sourced in United States

The Ultrasonic Cell Disruptor is a laboratory instrument designed to disrupt cells and subcellular structures through the application of high-frequency sound waves. It is used to release the contents of cells for further analysis or processing.

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5 protocols using ultrasonic cell disruptor

1

Quantification of DAO and LDC Enzymes in Human Serum and Mouse Feces

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Serum from humans was used to detect diamine oxidase (DAO) enzyme activity using enzyme-linked immunosorbent assay (ELISA), as described by Honzawa et al. (2011) (link). The human blood samples were kept at room temperature for 1 h before centrifugation for 20 min at 1,000 × g and were immediately stored at −80°C for subsequent quantification.
After sonication of the mouse caecal contents, the intestinal bacterial cell supernatant was used to determine lysine decarboxylase (LDC) enzyme activity using ELISA, as previously described (Lee and Cho, 2001 (link)). Feces samples (100 mg) suspended in 2.5 ml of cold phosphate-buffered saline were centrifuged at 1,000 × g for 20 min to obtain the supernatant and were centrifuged again (4,000 rpm, 20 min, 4°C) to obtain the bacterial cells. These cells resuspended in lysis solution (50 mM of Tris-HCl at pH 7.4, 2 mM of EDTA, and 100 mM of NaCl) were crushed using an ultrasonic cell disruptor (BRANSON, Branson, MO, United States) under the following conditions: 20 kHz, 150 W, and crushing for 60 s three times, 60 s apart at 4°C.
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2

Methylation Analysis of Hippocampal Genes

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MeDIP was performed as previously described (Han et al. 2016 (link)). The hippocampal tissues were rapidly removed from the rest of the brain. DNA was extracted using phenol chloroform. DNA was sonicated with an ultrasonic cell disruptor (Branson, Danbury, CT, USA) on ice three times for 10 s each to produce fragments of approximately 200–1000 bp. Each sample was incubated in assay strip wells containing a polyclonal antibody against 5-methylcytosine (1 μg/well) overnight at 4 °C, and normal mouse IgG was used as a negative control. The immunoprecipitated DNA fragments were eluted with DNA release buffer containing proteinase K. The purified DNA was subjected to qPCR. The following primer sequences were used: NLGN1, 5′-CCTTTGATCTCCCACAGACAG-3′, 5′-GCCTCCATGTGAGTTCAGGT-3′; GAPDH, 5′-CTCCTGTGTTCTCCCCTCAC-3′, 5′-GTTGAATTGGAGGAGGCTCA-3′; and H191CR, 5′-GAGCCGCACCAGATCTTCAG-3′, 5′-TTGGTGGAACACACTGTGATCA-3′. H191CR served as a positive control (methylated DNA), and GAPDH served as a negative control (unmethylated DNA). The MeDIP results were normalized to the CT values of the input DNA. The MeDIP/input ratio was analyzed as described above.
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3

Measuring cAMP in C2C12 cells

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The C2C12 cells were seeded at 1 × 105 cells/well into 24-well plates and then cultured at 37 °C in a humidified atmosphere with 5% CO2. After incubation with PD at 25 μM for 0, 0.5, 1, 2, and 4 h, the cells were collected and lysed by an ultrasonic cell disruptor (BRANSON, Danbury, CT, USA) on pulse mode (on 10 s, off 30 s, 30% amplitude, 3 min). The supernatants were collected by centrifugation at 12000 rpm for 10 min at 4°C. The protein concentrations in the supernatants were detected by the BCA method using BSA as a standard. The concentrations of cAMP were measured using commercial kits according to the instructions. The data were standardized with protein concentrations.
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4

Protein Expression and Purification Protocol

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Asgard Thor-Rab, RB and TRAPPC3 gene sequences and the human Rab11B gene sequence were codon-optimized (Escherichia coli), synthesized (GenScript), and subcloned into the pSY5 vector including an N-terminal HRV 3 C protease cleavage site and 8-histidine tag. Thor-Rab was initially synthesized in a pEX-A2J2 vector (Eurofins) and subcloned in the pSY5 vector. Asgard proteins and human Rab11B were expressed as described25 (link). The cell pellets were extracted with binding buffer (20 mM HEPES, pH 7.5, 500 mM NaCl, 20 mM imidazole) supplemented with 0.01% TritonX-100 (Nacalai), protease inhibitor cocktail (EDTA-free, Calbiochem) and 2 μl of 10,000 u/μl benzonase (Merck). Cell lysis was performed using an ultrasonic cell disruptor (Branson) with 5 s of pulse, 30-40% duty for 5 min. Proteins were loaded on a Ni-NTA affinity chromatography column (Qiagen), and washed with five column volumes of binding buffer. The N-terminal His-tag was removed by cleavage with HRV-3C protease at 4 °C, overnight. The eluted proteins in the binding buffer were subjected to a size exclusion chromatography (Enrich SEC 70, Bio-Rad) in 20 mM HEPES, pH 7.5, 150 mM NaCl. Proteins were pooled and concentrated with 10 kDa MWCO centrifuge filters (Merck).
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5

ChIP Assay of FOXC1 Binding

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RAW264.7 cells were crosslinked with 1% (v/v) formaldehyde and were subjected to ChIP assays using Chromatin IP Assay Kit (Millipore). Briefly, cells were lysed and then sonicated to obtain DNA fragments (200–1000 bp in size) using an ultrasonic cell disruptor (Branson, Danbury, CT, USA). The soluble chromatin was then immunoprecipitated with anti-FOXC1 antibody (ab5079; Abcam; 1:50) overnight at 4 °C with rotation and then supplemented with protein A agarose/salmon sperm DNA for 1 h at 4 °C. Reversing the cross-links was carried out for 4 h at 65 °C. DNA was purified with a DNA extraction kit (Qiagen). Finally, the purified DNA was analyzed by qPCR. Primers for qPCR are listed in Table S1. P1–P3 denote the three promoter regions of Foxc1 gene analyzed in ChIP assays, and P4 is at the distal region28 .
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