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7 protocols using hras c 20

1

Protein Extraction and Immunoblotting Protocol

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Cells were lysed and proteins extracted with RIPA buffer [10 (link), 54 (link)]. Protein concentration was measured using the Bradford method (Bio-Rad Laboratories). Samples were separated by SDS-PAGE and transferred to nitrocellulose membranes (Bio-Rad Laboratories). The following antibodies were obtained from Santa Cruz Biotechnology Inc.: ADAR1 (SC-73408), p-AKT ser473 (sc-7985-R), AKT (sc-8312), pERK Tyr204 (sc-7383), and HRAS (C-20) (sc-520). ERK1/2 (#9102) and ZEB1 (#3396) antibodies were purchased from Cell Signaling Technology Inc., the PCNA (ab92552) antibody was from Abcam and the GAPDH (MAB374) antibody was from EMD Millipore Corp.
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2

Protein Expression Analysis of Cell Lines

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A total of 1 × 106 cells were seeded in a 10-cm dish and treated with DMSO or 4-OHT for 14 days. Cells were trypsinized and cell pellets were lysed with RIPA buffer supplemented with 1× complete protease inhibitor cocktail (Roche) following the manufacturer’s protocol. Protein concentrations were determined using a Pierce BCA protein assay kit (Thermo Scientific). Lysates were separated on SDS-PAGE gels and transferred. Membranes were immunoblotted with the following antibodies: CDKN1A (Sc-397, Santa Cruz; 1:1000); HRAS (C-20, Santa Cruz; 1:1000); FoxF1 (ab168383, Abcam, 1:1000); and HSP90 (610,418, BD Biosciences, 1:3000). Protein bands were visualized using corresponding secondary antibodies (Dako) and ECL reagent (GE Healthcare).
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3

Immunoblotting Analysis of Cell Signaling Proteins

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Whole-cell lysates were prepared as previously described (56 (link)). Membranes were immunoblotted with the following antibodies: CDKN1A (Sc-397, Santa Cruz; 1: 1000), HRAS (C-20, Santa Cruz; 1: 1000), DPP4 (ab28340, abcam; 1: 2000), GAPDH (Sc-47724, Santa Cruz; 1: 5000). Protein bands were visualized using corresponding secondary antibodies (Dako) and ECL reagent (GE Healthcare).
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4

Ras and Ral Activation Assays

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Antibodies against β-actin and K-Ras were obtained from Sigma, H-Ras (c-20) and N-Ras (F155) from Santa Cruz Biotechnology, Ras and Ral-A from Upstate, M-Ras from Thermo Scientifics, R-Ras, AKT, p-AKT (S473), ERK1/2, p-ERK1/2 (T202/T204) from Cell Signaling Technology, and RASA1 from Epitomics. Active Ras-GTP and Ral-GTP levels were determined using Ras and Ral Activation Assay Kits (Millipore) respectively, following the manufacturer's instructions.
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5

Hippocampal Tissue Isolation and Protein Analysis

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To obtain hippocampal tissue, animals were anesthetized with isoflurane after which they were decapitated and tissue was quickly isolated. Tissue was homogenized in 0.1 M Tris-HCl (pH 6,8), 4% SDS supplemented with protease and phosphatase inhibitor cocktails (Sigma). The concentration of protein was adjusted to 1 μg/μl. 15 μg was used for Western blot analysis using 18-wells Criterion XT Bis-Tris precast gels (Bio-Rad). When using 26-wells gels, 10 μg protein was loaded. Primary antibodies used were HRAS (HRAS (C20), Santa Cruz Biotechnology), ERK (p44/42 MAPK, Cell Signaling), phospho-ERK (Ph-p44/42 MAPK, Cell Signaling). Actin was always included as a loading control (Actin, Millipore). Blots were probed with IR Dye secondary antibodies (IR Dye 680LT or 800CW, LI-COR) and visualized using LI-COR Odyssey infrared imager. For quantitative analysis, Odyssey V3.0 software was used.
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6

Western Blot Analysis of Signaling Proteins

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Cell lysates were separated on 15% polyacrylamide gels and transferred onto nitrocellulose for 2 h at 250 mA, followed by blocking with 5% (w/v) nonfat dried milk for 1 h. Blots were incubated with the appropriate primary antibody with dilution according to the manufacturers’ instructions [beta-actin(Mab AC-40, Sigma; dilution 1:5000); PAK2 (Cell signaling 2608, dilution 1:1000); phospho-S144/141-PAK1/2 (Abcam ab40795; dilution 1:2000); Rac1 (BD Transduction Laboratories 610650, clone 102; dilution 1:1000); Rac1(Millipore 05-389, clone 23A8; dilution 1:1000); Ras(Mab27H5, Cell Signaling 3339, dilution 1:200); H-Ras (C20, SantaCruz sc-520, dilution 1:200); in buffer B (50 mM Tris-HCl, pH 7.2, 150 mM NaCl, 5 mM KCl, 0.05% (w/v) Tween 20] for 18 h and subsequently for 2 h with a horseradish peroxidase-conjugated secondary antibody (mouse: Rockland 610-1034-121; dilution 1:3000; rabbit Rockland 611-1302; dilution 1:3000). For the chemiluminescence reaction, ECL Femto (Pierce) was used. The signals were analyzed densitometrically using the KODAK 1D software.
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7

Protein Fractionation and Western Blotting

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Cells were lysed with SDS sample buffer [2% SDS, 10% glycerol, 50 mM Tris-HCl (pH 6.8)] containing 1 M dithiothreitol for fractionation by SDS-polyacrylamide gel electrophoresis. Separated proteins were transferred to a polyvinylidene difluoride membrane and exposed to primary antibodies including those to H-Ras (C-20; Santa Cruz Biotechnology, Santa Cruz, CA, USA), to Akt (#9272; Cell Signaling Technology, Danvers, MA, USA), to Ser 473 -phosphorylated Akt (#4060; Cell Signaling Technology), to ERK1/2 (#9102; Cell Signaling Technology), to Thr 202 / Tyr 204 -phosphorylated ERK1/2 (#4370; Cell Signaling Technology) and to a-tubulin (Sigma). Immune complexes were detected with horseradish peroxidase-conjugated secondary antibodies and enhanced chemiluminescence reagents (Chemi-Lumi One L; Nacalai Tesque).
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