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17 protocols using cd24 pe cy7

1

MCF7 Breast Cancer Cell Culture

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MCF7 breast cancer cells were obtained from ATCC (Manassas, VA). MCF7 cells were cultured in EMEM (ATCC) supplemented with 10% FBS, 10 μg/mL insulin (Sigma I02643), 50 units/mL pencillin and 50 μg/mL Streptomycin (Invitrogen). Anti-Mouse Ig CompBead Plus (#560497), anti-Rat Ig CompBead Plus (#560499), EpCAM-PE (#347198), CD44-APC (#559942), CD49f-PE-Cy5 (#551129), Isotype-PE (#349043), Isotype-APC (#340442), Isotype PE-Cy5 (#553931) and Isotype-PE-Cy7 (#348788) antibodies were from BD Bio-sciences (San Jose, CA). CD24 PE-Cy7 (#311120) was from Biolegend (San Diego, CA). Aldefluor reagent (BAAA-DA) was synthesized by the Vahlteich Medicinal Chemistry Core (University of Michigan) from BODIPY FL succinimidyl ester (Invitrogen #D2184), purified by TLC, structure verified by HPLC, aliquoted at 50μg per micro-centrifuge tube and stored at −20°C(unpublished data). DAPI (D8417) and Live-Dead near-IR (L10119) were from Invitrogen and resuspended at 1 mg/mL in dd H2O or 200 μL DMSO, respectively. The ArC Bead Kit (A10346) was from Invitrogen. Aldefluor assay buffer (#01072) and DEAB (#01705) were from STEM-CELL Technologies (Vancouver, BC, Canada).
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2

Isolation of Mammary Gland Single Cells

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Single cell suspension of mammary gland was prepared according to the protocol modified from Shackleton et al.58 (link). Briefly, the 4th mammary glands were cut into small pieces after removal of the lymph node. The tissues were digested in a mixture of 5 ml collagenase I buffer (10% FBS, 100 mg/ml streptomycin, 10 U/ml penicillin, 300 U/ml collagenase I (ThermoFisher) and 100 U/ml hyaluronidase (Sigma) in DMEM/F12 (1:1) medium for 1–2 hours at 37 °C with moderate shaking. The cell suspension was washed in PBS and digested further in 0.25% trypsin-EDTA for 5–10 minutes. The red blood cells were removed by incubation in red blood cell lysing buffer (Biolegend) on ice for 5 minutes. The single cell suspension was passed through 40 µm cell strainer (BD Bioscience) before stained with the mixture of antibodies on ice for 30 minutes. After washing in PBS, the dead cells were labeled with Fixable Viability Dye eFluor 780 (eBioscience) for 30 minutes on ice. Flow cytometry was carried out by BD LSR II, and data analysis was done by Flowjo. The following antibodies were used: CD45-PE (Biolegend, 103106, 1:200), CD31-PE (Biolegend, 102507, 1:200), TER119-PE (Biolegend, 116207, 1:200) CD24-PeCy7 (Biolegend, 101822, 1:200) and CD29-APC (eBioscience, 17–0291–82, 1:200).
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3

Multiparametric Flow Cytometry Analysis

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Cells were thawed and stained with antibodies against CD19 Pacific Blue, CD21 FITC, IgD PE, CD24 PEcy7, CD27 APC Cy7 (Biolegend); IgM FITC, IgD FITC, and IgM PE (BD Biosciences); CD38 APC and IgD APC (Miltenyi Biotec), and with 7AAD or FVD 506 (eBioscience) as viability markers. After staining, cells were fixed with a 1% paraformaldehyde/PBS solution before analysis on a MACS-Quant Analyzer (Miltenyi Biotec). Flow cytometry data analysis was performed using Flowjo data analysis software (Tree Star, Ashland, OR).
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4

Multicolor Flow Cytometry Panel

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Commercial antibodies (clones, fluorophores and sources) are as follows: CD3-FITC (145–2C11), CD62L-PE (Mel-14), CD4-PErCP/Cy5.5 (RM4–5), CD8-PerCP/Cy5.5 (53–6.7), CD8-APC (53–6.7), CD209b-APC (22D1), IgM-FITC (II/41), CD4-PE (GK1.5), CD25-AF488 (PC61.5), Streptavidin-PE, CD169-PE/Cy7 (3D6.112) (eBioscience, San Diego, CA); CD11b-FITC (M1/70), CD49d-FITC (R1–2), TCRβ-FITC (GL3), CD21/35-PE (7E9), CD23-APC (B3B4), Ly6G-PE (RB6–8C5), Ly6C-PerCP/Cy5.5 (HK1.4), CD11c-PE/Cy7 (N418), B220-PerCP/Cy5.5 (RA3–6B2), B220-APC (RA3–6B2), B220-APC/Cy7 (RA3–6B2), CD69-BV421 (H1.2F3),CD23-Biotin (B3B4), F4/80-APC (BM8), Ly6G-BV421 (1A8), CD45-Pacific Blue (30-F11), CD45-BV510 (30-F11), CD43-PE (1B11), CD24-PE/Cy7 (M1/69), IgD-Pacific Blue (11–26c.2a), CD69-PE/Cy7 (H1.2F3), IgD-PerCP/Cy5.5 (11–26c.2a), Ly51-AF647 (6C3), CD3-Pacific Blue (17A2), CD3-PE (17A2), TCRγ/δ-biotin (GL3), Streptavidin-PE/Cy7 (Biolegend, San Diego, CA); Siglec-F-PE (E50–2440) (BD Biosciences, San Jose, CA). Samples were preincubated with 1 μg Fc-block (2.4G2 hybridoma; ATCC).
Cells were acquired either on the BD Biosciences LSR Fortessa or with a BD FACScan flow cytometer with DxP multi-color upgrades by Cytek Development Inc. (Woodland Park, NJ) and analyzed using FlowJo software (FlowJo LLC, Ashland, OR).
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5

Isolation and Analysis of Mammary Epithelial Cells

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Mammary glands from 8- to 12-wk-old virgin female mice or mice at lactation day 2 were isolated. The minced tissue was digested in RPMI 1640 with 25 mM HEPES, 5% FBS, 1% PSQ, 300U/mL Collagenase III (Worthington) for 2 hours at 37°C. After lysis of the red blood cells, single cell suspension was obtained by sequential incubation with 0.25% Trypsin-EDTA for 5 min and 0.1 mg/mL DNase I (Sigma) for 5 min at 37°C with gentle pipetting, followed by filtration through 40-μm cell strainers. The antibodies used for flow cytometry were: PE-conjugated CD31, CD45, TER119 (BD PharMingen), CD24-PE/cy7 and CD29-APC (Biolegend). All sorting was performed using FACSAria or FCASJazz (Becton Dickinson). The purity of sorted population was routinely checked and ensured to be >95%. Cells were harvested for quantitative RT-PCR experiments. For insulin treatment experiment, primary mammary epithelial cells were seeded in DMEM (Invitrogen) supplemented with 10% FBS. Adhered cells were treated with 10μg/mL insulin for 24 hours and were harvested for quantitative RT-PCR experiments. Cytosolic triacylglycerol and nonesterified fatty acid in primary mammary epithelial cells were quantified following manufacturer's protocols (Triglycerides kit, Shanghai KEHUA bio-engineering CO., and LabAssay NEFA kit, Wako).
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6

Multicolor Flow Cytometry Analysis

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The following antibodies were used for flow cytometric analyses: CD326 (EpCam)
APC-Cy7 (clone G8.8), CD24 PE-Cy7 (clone: M1/69), T1α/podoplanin APC
(clone: 8.1.1.), CD31 Pacific Blue (clone 390), all Biolegend. CD45 V450 (clone
30-F11, BD Biosciences). Multicolor flow cytometry was performed with an LSR
Fortessa® using DIVA software (BD Bioscience). For analytical
measurements
0.5–1 × 106cells were freshly stained with fluorochrome-labeled antibodies for
15 minutes at 4 °C in MACS buffer. The
stained cells were washed and fixed in 4% paraformaldehyde, and resuspended in
MACS buffer.
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7

Isolation and Validation of Intestinal Enteroendocrine Cells

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For cell sorting experiments, 100.106 intestinal epithelial cells were rinsed in FACS buffer (PBS, 3% FCS, 2 mM EDTA), blocked with Human Fc Receptor Binding Inhibitor Antibody (eBioscience) and stained with CD45-BV421 (Bio Legend) and CD24-PeCy7 (Bio Legend) antibodies. Dead cells were excluded with propidium iodure (eBiosciences). During sorting experiments, cells were placed in FACS buffer with RNAse inhibitor (Life Technologies). CD24 marker was used to select EEC, and CD45 was used to get rid of immune cells, especially B cells that also expressed CD24. CD45-negative, CD24-positive EEC were sorted on a jet-in-air flow cytometer (MoFlo Astrios, Summit software, Beckman Coulter). After FACS, an EEC enriched population was obtained containing 1.3.106 cells.
The validation of the EEC sorting was performed in a limited number of independent subjects (n = 7). Gene expression in CD24+ cells was analyzed by RT-qPCR in 3 Ob subjects and protein expression was studied by Western Simple assay on 2 Ob and 2 ObD subjects.
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8

Flow Cytometric Immunophenotyping of Immune Cells

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For flow cytometry, cells were stained with mAbs in PBS with 1% BSA for 20 minutes in the dark at 4°C. Cells were subsequently washed and fixed with a 1% paraformaldehyde/PBS solution before analysis on BD FACSCalibur flow cytometer (BD Immunocytometry Systems, [BDIS] San Jose, CA) or MACSQuant® Analyzer (Miltenyi Biotec). The anti-human antibodies used were CD19 Pacific Blue, CD24 PE-Cy7, CD38 APC, CD27 APC-Cy7, CD21 FITC, CD1c PE (all from Biolegend, San Diego, CA), CD10 PE, CD5 PE, CD23 PE, IgD PE, IgM PE-Cy5 (all from BD Bioscience), BAFF-R PE (eBioscience Inc., San Diego, CA). The following anti-mouse antibodies were used: CD24 Pacific Blue, CD21 FITC, CD23 PE, BAFF-R PE, CD21 APC, SA-APC-Cy7 (secondary antibody for IgD biotin staining), IgM PE-Cy7 (all from Biolegend), and IgD Biotin (eBioscience). Living cells were identified by forward scatter and side scatter gating and/or exclusion of 7-aminoactinomycin-D (eBioscience) added immediately prior to data acquisition or fixation. Flow cytometry data analysis was performed using Flowjo data analysis software (TreeStar, Ashland, OR).
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9

Multiparametric Flow Cytometry for Cellular Analysis

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The following antibodies were used in this study:
Fluorescein isothiocyanate (FITC)-conjugated CD31 (BD Biosciences, United States, 553372), CD45 (BD Biosciences, 553080), TER119 (BD Biosciences, 557915); biotinylated CD31 (BD Biosciences, 553371), CD45 (BD Biosciences, 553078), TER119 (BD Biosciences, 553672); CD24-PE/cy7 (Biolegend, United States, 101822), CD29-APC (Biolegend, 102216), Procr-PE (eBioscience, United States, 12-2012-82), PD-L1-PE (eBioscience, 124308), Streptavidin-APC-eFluor 780 (eBioscience, 47-4317-82), and Streptavidin-V450 (eBioscience, 48-4317-82). Antibody incubation was performed on ice for 20–25 min in PBS with 5% fetal bovine serum. All the antibodies were employed at 1:200 dilutions. Before cell sorting and analysis, cells were filtered through 40 μm cell strainers. Single cells gating and sorting were performed using an FACS BD Aria III or Moflo XDP Beckman flow cytometer. All analyses were performed using an LSRFortessa X20. FACS data were analyzed using FlowJo software (Tree Star, United States).
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10

Immune Profiling of Tumor-Draining Lymph Nodes

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Tumors, inguinal and axillary lymph nodes were harvested 2 weeks after injection. After digestion with DNAse, Collagenase I and Collagenase IV, washing, and counting, 10 million cells per FP were stained with fixable Live/Dead Zombie (BioLegend) and respective antibodies: MHCII-BV421, F4/80-BV510, CD11b-BV605, CD11c-BV650, Ly6C-BV711, CD45R-BV785, CD90.2-BV785, Ly6G-BV785, NK1.1-BV785, CD8alpha-PerCPCy5.5, CD103-APC, CD45-AF700, CD24-PECy7 (Biolegend, eBioscience).
Flow cytometry was performed on a BD LSR Fortessa instrument at the ImmunoX Flow Cytometry CoLab. Analysis of flow cytometry data was done using FlowJo (Treestar) software, and graphs and figures were produced with GraphPad Prism software. All experiments were done in triplicates.
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