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18 protocols using phrl cmv

1

CLDN8 3'-UTR Luciferase Assay

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The 3’-UTR of CLDN8 mRNA bearing miRNA binding sites (corresponding to 905–2147 nucleotides of RefSeq NM_199328.2) was cloned into the XhoI and NotI sites downstream of the Renilla luciferase reporter vector, pmiR-RB-REPORT (RiboBio, Guangzhou, China), according to the manufacturer’s instructions. The miR-RB-REPORT-mutated vector was generated corresponding to the predicted binding sites on the CLDN8 3’-UTR for miR-223. For the miRNA binding site, eight nucleotides in the 5’seeding region were substituted. Each pMIR construct (100 nM), along with the renilla luciferase control plasmid, phRL-CMV (Promega; 200 ng/well), was transfected into 293T cells in 24-well plates using Lipofectamine 2000 (Invitrogen) according to the manufacturer’s guidelines. Cells were harvested 48 h after transfection. Firefly and renilla luciferase activities were measured using the Dual Luciferase Reporter Assay System (Promega) according to the manufacturer’s instructions. Experiments were performed in triplicate.
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2

Assessing ER Stress Pathway Using Luciferase

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HT1080 cells were transfected with a firefly luciferase gene-containing reporter plasmid (pGRP78pro160-Luc) that contains human grp78 promoter region (nucleotides − 160 to + 7 to the start of transcription) and the Renilla luciferase gene-containing plasmid phRL-CMV (Promega, Madison, WI, USA) as an internal control, as described previously8 (link), 25 (link). The transfected cells were treated with spautin-1, 2DG (10 mM), and/or TM (10 μg/mL) for 18 h. The cells were harvested and assayed using the Dual-Glo Luciferase Assay System (Promega), and the relative activity of firefly luciferase to Renilla luciferase was determined.
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3

Evaluating HIF1α CAD Activity in Fibroblasts

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FIH activity was evaluated using a UAS-luc/GAL4DBD-HIF1αCAD binary reporter system (HIF1α CAD reporter) (Coleman et al., 2007 (link)). For the luciferase reporter assays, human lung fibroblasts (control or IPF fibroblasts) were reverse transfected using Lipofectamine 3000 (Invitrogen) with 50  ng of phRL-CMV (Promega UK, Southampton, UK), which constitutively expresses the Renilla luciferase reporter, plus 225  ng of plasmid-GAL4DBD-HIF1αCAD and 225  ng of plasmid-UAS-luc per well. After 24 hour of transfection, a final concentration of 1 mM of DMOG, 1 mM DMSO or 20 μM freshly prepared T‐hydro (tert‐butyl hydroperoxide) (Sigma-Aldrich, Poole, UK) was dosed for 16 hours. T‐hydro was added to the cells every 2 hours. Finally, the transcriptional assay was carried out using the Dual-Luciferase reporter assay system (Promega) following the manufacturer’s protocol.
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4

Synthesis of Thiazole-Substituted Enoates

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IHSF001 ((E)-ethyl 4-oxo-4-(thiazol-2-ylamino)but-2-enoate) was obtained from AKos Consulting & Solutions GmbH (Klarenbeek, Netherlands). The syntheses of IHSF058-115 were described in Ref. [18 (link)] and those of IHSF133 and compounds 142-144, in the Supplementary Materials. WA was sourced from Santa Cruz Biotechnology (Dallas, TX, USA) and CEL, from Merck (Kenilworth, NJ, USA). All compounds were dissolved in DMSO at 10 mM. phRL-CMV and pCMV-Luc were obtained from Promega (Madison, WI, USA) and Origene (Rockville, MD, USA), respectively. pCMV-β-Gal was previously described [57 (link)]. Adenovirus Ad-CMV-RLUC was obtained from SignaGen Laboratories (Frederick, MD, USA).
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5

Regulation of NFKB Transcription Assay

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HKe3 ER:HRAS V12 cells were transfected with the indicated siRNAs for 48 h in 24-well plates, followed by 24-h transfection with 250 ng of NFKB reporter and 10 ng of phRL-CMV (Promega, E2261), which constitutively expresses the Renilla luciferase reporter. One day before the measurement of luciferase activity 100 nM 4-OHT was added. Finally, the transcription assay was carried out using the Dual-luciferase® reporter assay system (Promega, E1960) following the manufacturer’s protocol.
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6

Investigating NFKB Transcriptional Activity

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HKe3 ER:HRAS V12 cells were transfected with the indicated siRNAs for 48
h in 24-well plates, followed by 24-h transfection with 250 ng of NFKB reporter
and 10 ng of phRL-CMV (Promega, E2261), which constitutively expresses the
Renilla luciferase reporter. One day before the measurement
of luciferase activity 100 nM 4-OHT was added. Finally, the transcription assay
was carried out using the Dual-luciferase® reporter assay system
(Promega, E1960) following the manufacturer’s protocol.
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7

Transfection and Luciferase Assay Protocol

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CMT-93 cells were transfected with 0.7 μg of each constructed plasmid, 5 ng of phRL-CMV (Promega), and 2.1 μl of X-tremeGENE HP DNA Transfection Reagent (Roche Diagnostics GmbH), following the manufacturer’s instructions. Twenty-four hours after transfection, luciferase activity was measured using the dual-luciferase assay kit (Promega), according to the manufacturer’s instructions. Data shown are mean ± SD values of three independent experiments, and are reported as fold-induction to cells transfected with Luc-mTollip_3´-UTR1-2782.
For the miRNA inhibition assay, each miRNA-specific inhibitor or control inhibitor was transduced into CMT-93 cells at the concentration of 5 nM with the reporter plasmid Luc-mTollip_3´-UTR1-2782, using X-tremeGENE siRNA Transfection Reagent (Roche Diagnostics GmbH). After culturing for 24 h, the cells were lysed to measure luciferase activity, as described earlier. Data shown are mean ± SD values of two or three independent experiments and expressed as values relative to the control without inhibitors.
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8

Transfected HEK Cells for NF-κB Assay

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HEKhTLR4 cells stably transfected with human TLR4, CD14 and MD2 cDNA constructs purchased from Invivogen (San Diego, CA, USA) and HEKhTLR2 cells stably transfected with a human TLR2 cDNA construct (a gift from Dr. Evelyn A. Kurt-Jones, University of Massachusetts Medical School, Worcester, MA, USA) were maintained in DMEM supplemented with 10% FCS and G418 (0.5 mg/ml). HEKhTLR4, HEKhTLR2 and HEK293 cells plated in 24-well plates (Falcon) at 1 × 105 cells/well were transfected with 400 ng of NF-κB-driven firefly luciferase plasmid (pNF-κB-Luc) (Clontech, Mountain View, CA, USA) and 10 ng of CMV promoter-driven Renilla luciferase plasmid (phRL-CMV) (Promega, Madison, WI, USA) for 16 h. After transfection, cells were stimulated with 5 μg/ml hMrp8, 100 ng/ml LPS or 100 ng/ml BLP for 6 h. Luciferase activity was determined using the dual-luciferase reporter assay system (Promega). Transfection efficiency was normalized in all experiments with simultaneously measured Renilla luciferase activities.
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9

Plasmid Constructs for HMGCS2, PPARα, PXR Studies

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Human HMGCS2 promoter-inserted pGL4.10 plasmids [3 (link)], human PPARα expression plasmid (hPPARα-pTargeT) [3 (link)], p3A4-pGL3 [6 (link)], and human PXR (hPXR) expression plasmid (hPXR-pTargeT) [6 (link)] were prepared previously. phRL-TK, phRL-CMV, phRL-SV40, pGL4.31, and PGC1α-expressing pFN21A plasmids were purchased from Promega (Madison, WI, USA). PGC1α-LXXLL-pFN11A—the pFN11A-based plasmid with the nuclear receptor-binding LXXLL motif of PGC1α (EAEEPSLLKKLLLAPANTQ)—and the pFN10A plasmid with hPPARα and hPXR cDNA were prepared as previously described (PPARα-pFN10A and PXR-pFN10A) [3 (link),9 (link)]. hPXRΔAF2-pTargeT was produced using a KOD Plus mutagenesis kit (TOYOBO, Otsu, Japan) with specific primer sets for inserting a stop codon between Ala421 and Thr422.
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10

Angptl4 Promoter Luciferase Assay

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PPRE in the intron 3 of Angptl4 initially cloned into SEAP vector (gift of Sander Kersten, Wageningen University, The Netherlands) was excised out and cloned into pGL3 vector (Promega) downstream of firefly luciferase reporter gene. Raw macrophages were co- transfected with pGL3 construct (400 ng per well) and Renilla luciferase control plasmid (phRL-CMV; Promega, 1.5 ng per well) in 24-well plates using Lipofectamine 2000 (Invitrogen) according to the manufacturer's guide. 24 h after the transfection, cells were treated with or without Ac-LDL or rosiglitazone (a synthetic PPAR-γ agonist) for another 24 h. Luciferase levels were measured using Dual Luciferase Reporter Assay System (Promega). Firefly luciferase activity was normalized to the corresponding Renilla luciferase activity and plotted as a percentage of the control. Experiments were performed in triplicate and repeated at least three times.
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