The largest database of trusted experimental protocols

59 protocols using orca r2 ccd camera

1

Immunocytochemistry Detection of Epitope-Tagged Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were fixed with PBS/4% paraformaldehyde for 15 min and then permeabilized with PBS/1% Triton X-100 for 10 min. Cells were washed three times with PBS, then blocked in PBS/10% goat serum for 45 min. Cells were then stained with anti-Flag or anti-HA antibody in PBS for 4 h, before being washed 4 more times (over 15 min). Cells were then stained with secondary antibody (A11037, Thermo Fisher Scientific, Waltham, MA, USA), fluorescently labelled phalloidin (PHDG1-A, Cytoskeleton, Denver, CO, USA) and DAPI (Merck) for 1 h, before 4 final washes (as above). Slides were mounted onto glass coverslips using Fluoroshield (Merck) and viewed on an IX83 fluorescent microscope (Olympus, Shinjuku, Japan), using an Orca R2 CCD camera (Hamamatsu Photonics, Hamamatsu, Japan) and CellSens software (Olympus, Shinjuku, Japan). When performing quantified assays, transfections, immunocytochemistry and microscopy were performed by a researcher who was blinded as to which plasmid was being introduced on each cover slip. This data was decoded only after cells had been viewed and counted.
+ Open protocol
+ Expand
2

Live-Cell and Fixed-Cell Imaging Protocols

Check if the same lab product or an alternative is used in the 5 most similar protocols
Live cell imaging was carried out on the PerkinElmer UltraVIEW spinning disc system fitted on an Olympus IX80 confocal microscope with a 37°C and 5% CO2 chamber. Images were captured with the 40× 1.3 NA (oil) UPLAN objective, 2× Hamamatsu Orca‐R2 CCD camera and Volocity 3.7.1 software. The cells were imaged at 2 μm z‐step size and 30‐min time intervals. Fixed samples were imaged on the Leica SP8 confocal microscope with the 40× 1.3 NA (oil) or 63× 1.4 NA (oil) Plan Apo objective and LAS X 3.7.4 software. The cells were imaged at 0.3 μm z‐step size and 2× line average. FRAP was performed on the Zeiss LSM‐900 confocal microscope with 63× 1.40 NA (oil) Plan Apo objective and ZEN Blue 2.1 software equipped with a 37°C heated stage.
+ Open protocol
+ Expand
3

High-Throughput Bacterial Growth Monitoring

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures were extracted and transferred into a 24-well plate for mixing, and from there aliquots were transferred to a 96-well plate. OD was measured at 595 nm for the growth curve and at 600 nm for MIC experiments. Cultures from the last timestamp of the growth curve for each regime were preserved by mixing 1 mL of 4% PFA (Fisher Scientific, Waltham, MA, USA, Cat. No. AAJ61899AK) and 1 mL of sample. For microscopy, samples were centrifuged for two to three minutes at 900 g’s and an aliquot was transferred to a slide. Microscopy was performed on an OLYMPUS.IX81 Inverted Widefield Microscope with a 100X 1.40NA SAPO objective lens and images were captured via a Hamamatsu Orca R2 CCD camera.
+ Open protocol
+ Expand
4

Measuring Intracellular Calcium Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
For measurements of free intracellular calcium ([Ca2+]i) the cells were loaded with 3 µM (HEK) or 1 µM (DRG) of the fluorescent calcium indicator FURA-2AM (1 mM in DMSO, Biotrend, Cologne; Germany) and 1 µl Pluronic F-127 (10% in DMSO, Calbiochem, Darmstadt, Germany) for 45–60 min (HEK) and 30 min (DRG) in Tyrode's solution containing 137.6 mM NaCl, 5.4 mM KCl, 0.5 mM MgCl2, 1.8 mM CaCl2, 10 mM HEPES and 5 mM glucose (adjusted to pH 7.3 with NaOH; Roth). After washing them trice with Tyrode’s solution and at least 20 min resting, cover slips were mounted in an open bath chamber (Series 40 Quick Change Imaging Chamber; Warner Instruments, Hamden, USA) on an inverted microscope (Olympus IX81; Olympus, Tokyo, Japan) equipped with an image acquisition and analysis system (xcellenceRT; Olympus) and superfused with Tyrode’s solution (~ 2 ml min−1). Cells were illuminated alternatingly with light of 340 and 380 nm wavelength (≥ 0.5 Hz) and the respective fluorescent signals at 510 nm were detected by an ORCA-R2 CCD camera (Hamamatsu Photonics, Hamamatsu, Japan; scheme see Fig. 1c). The ratio of fluorescence emission at 510 nm for excitation at 340 vs 380 nm excitation was used as relative change in [Ca2+]i [22 (link)]. All experiments were carried out at room temperature.
+ Open protocol
+ Expand
5

Live-cell Microscopy Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images were acquired using a Nikon Ti inverted microscope equipped with a temperature-controlled incubator, an Orca R2 CCD camera (Hamamatsu), a 60X Plan Apo oil objective (NA 1.4, Nikon), an automated xy-stage (Ludl) and light engine LED excitation source (Lumencor). All experiments were performed at 37°C. Microscope control was done with MATLAB (Mathworks) scripts interfacing with μManager31 . Typical exposure was low (50–100 ms) in order to reduce photobleaching, and the reporter channels were acquired using 2×2 binning (CCD chip dimension of 1344 × 1024 pixels, effective pixel size of 129nm × 129nm). 16 bits TIFF images were taken every 5–8 minutes, and focal drift was controlled via the Nikon PerfectFocus system, as well as a custom routine based on z-stack images of a sacrificial position. The following filter sets were used for acquisition: GFP (Semrock GFP-3035B), RFP (Semrock mCherry-A), YFP (Semrock YFP-2427A) and CFP (Semrock CFP-2432A).
+ Open protocol
+ Expand
6

TIRF Microscopy of GLUT4 Translocation

Check if the same lab product or an alternative is used in the 5 most similar protocols
CHO-K1 hIR/GLUT4-myc-GFP cells were grown in 96-well imaging plates (35,000 cells/well; Mobitec, Göttingen, Germany) overnight as previously reported [16 (link),17 (link)]. Cell culture medium was aspirated off and, after washing the cells with HBSS (VWR, Vienna, Austria), replaced by HBSS (Thermo Fisher, Waltham, MA, USA) for 3 h. The cells were incubated with insulin or Bellis perennis extracts dissolved in KRPH buffer and imaged on an Olympus IX-81 inverted microscope in objective-type total internal reflection (TIR) configuration via an Olympus 60× NA = 1.49 Plan-Apochromat objective as described earlier [27 (link),28 (link)]. The 96-well plates were placed on an x–y stage (CMR-STG-MHIX2-motorized table; Märzhäuser, Wetzlar, Germany). Scanning of larger areas was supported by a laser-guided automated focus-hold system (ZDC2). The 488 nm emission of the diode laser (Toptica Photonics, Munich, Germany) was used to image green fluorescent protein (GFP) fluorescence. After appropriate filtering, the fluorescence signal was recorded using an Orca-R2 CCD camera (Hamamatsu Photonics, Herrsching, Germany).
+ Open protocol
+ Expand
7

Live Imaging of Hermaphrodite Nematodes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult hermaphrodites were anesthetized with tricaine and tetramisole and immobilized between a coverslip and agarose pad on a slide. The time-lapse images shown in Figure 2A–E and Figure 4A–B were captured on an Olympus (Center Valley, PA) IX71 microscope equipped with a 60× PlanApo NA 1.42 oil objective and an Orca R2 CCD camera (Hamamatsu Photonics, Hamamatsu City, Japan). Hg arc excitation light was shuttered by a Sutter Lambda 10-3 shutter controller (Sutter Instruments, Novato, CA). Images shown in Figure 5A were captured with an Intelligent Imaging Innovations (Denver, CO) Marianas Spinning Disk Confocal equipped with a Photometrics (Tucson, AZ) Cascade QuantEM 512SC EMCCD, and Zeiss 63× 1.4 objective. Image sequences in Figure 6 were captured with a Perkin Elmer-Cetus (Waltham, MA) Ultraview Spinning Disk Confocal equipped with an Orca R2 CCD and an Olympus 60× 1.4 objective.
+ Open protocol
+ Expand
8

Assessing Tat-Induced Integrin and Actin Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
U937 cells (6×104) were pretreated with Tat in the presence or absence of cannabinoid (1 μM; THC, CP55940; 2h at 37°C), then seeded in Lab-Tek Chamber Slides (Nunc, ThermoFisher Scientific, Waltham, MA) precoated with Coll IV (20 μg/ml) and incubated at 37°C (1h) to allow for cellular adhesion. The cells were fixed in 4% paraformaldehyde (1h) and rinsed in PBS. Cells were permeabilized with 0.1% Triton X-100 in PBS (20 min) then blocked with 5% BSA in PBS (1h). Immunofluorescent staining was performed using a FITC-conjugated anti-human β1- integrin antibody (1:250, 2h)(Millipore, Billerica, MA), followed by AlexaFluor594-conjugated Phalloidin to visualize F-actin (1:500, 2h)(Invitrogen). Cells were counterstained with DAPI (1:20,000, 5 min)(Invitrogen) for nuclear identification. ProLong Gold Antifade Reagent (Invitrogen) was used for mounting of the coverslips in addition to stabilization of the immunofluorescent signal. Image acquisition was performed using a BX51 microscope with a spinning disk unit (Olympus, Center Valley, PA) and an Orca-R2 CCD camera (Hamamatsu, Japan). Images then were processed using the Slidebook software package (Intelligent Imaging Innovations, Denver, CO, USA).
+ Open protocol
+ Expand
9

Fluorescence Microscopy of Histological Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images of HE staining were obtained using an Olympus BX51 Microscope (Tokyo, Japan) equipped with a DFK 23U digital camera and Olympus Plan Apo 10× and 20× objectives. Fluorescence images were acquired using a fluorescence microscope (Olympus BX60) equipped with the appropriate filters (U-MNIB, U-MNG) and a Hamamatsu Orca R2 CCD camera.
+ Open protocol
+ Expand
10

Huntingtin Exon 1 Aggregation Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
To study the effect of HTTex1 sequence on assembly formation, [rnq-] yeast cells transformed with 25Q-GFP, 25QP-GFP, 43Q-GFP, 43QP-GFP, 97Q-GFP or 97QP-GFP plasmids were grown in parallel to exponential phase, then induced with galactose (see yeast methods). Thereafter, cells were examined by wet-mount on poly-lysine slides (VWR International LLC) at 4, 8, 12 and 24 hr post-induction, using an Axioscope A1 epifluorescence microscope (Carl Zeiss; Oberkochen, Germany), equipped with an X-Cite Series 120Q lamp and an Orca R2 CCD camera (Hamamatsu Photonics; Hamamatsu City, Japan), with a 63x Plan-Apochromat oil-immersion objective (NA 1.4). Fluorescence images were taken using the 470/40 nm and 525/50 nm excitation and emission filters. DIC images were also taken. Cells containing a) LAs b) SAs or c) diffuse fluorescence were manually counted for each time point and construct, and the data were plotted using R.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!