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Nano pure system

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Nano Pure system is a high-performance water purification system designed to produce ultrapure water for critical laboratory applications. It utilizes a multi-stage purification process to remove a wide range of contaminants, ensuring the consistent production of water with exceptional purity and low levels of ions, particles, and organic matter.

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24 protocols using nano pure system

1

Reversed-Phase Liquid Chromatography Procedure

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All reagents were purchased from Sigma-Aldrich (St. Louis, MO), unless stated otherwise. Formic acid (FA) and glacial acetic acid (HOAc) were purchased from Fisher Scientific (Pittsburgh, PA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Water was deionized by a NanoPure system from Thermo Scientific (Marietta, OH). Fused silica capillary tubing was purchased from Polymicro Technologies (Phoenix, AZ). The RPLC column (Jupiter 5 μm C5 300 Å, LC Column 250 × 4.6 mm) was purchased from Phenomenex (Torrance, CA).
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2

Protein Extraction and Preparation

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Bovine pancreas TPCK-treated trypsin, urea, ammonium bicarbonate (NH4HCO3), dithiothreitol (DTT), iodoacetamide (IAA), cOmplete™ Protease Inhibitor Cocktail and PhosSTOP™ tablets (provided in EASYpacks), Microcon-30kDa Centrifugal Filter Unit with Ultracel-30 membrane (molecular weight cut-off, MWCO: 30 kDa, RC30 kDa) were purchased from Sigma-Aldrich (St. Louis, MO). Ultracel regenerated cellulose (RC) membranes with 100 kDa MWCO (RC100 kDa), Biomax polyethersulfone (PES) membranes with 50 kDa MWCO (PES50 kDa), 100 kDa MWCO (PES100 kDa), 300 kDa MWCO (PES300 kDa), 500 kDa MWCO(PES500 kDa), and Durapore hydrophilic polyvinylidene fluoride (PVDF) membrane with 0.1 μm pore size (HILICPVDF 0.1 μm) were purchased from MilliporeSigma (Burlington, MA). Formic acid (FA) and acetonitrile (ACN) were purchased from Fisher Scientific (Pittsburgh, PA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). MS compatible human protein extract (Intact K562 human cell lysate) was purchased from VWR (Radnor, PA). Mammalian Cell-PE LBTM buffer for cell lysis was purchased from G-Biosciences (St. Louis, MO). Water was deionized by a Nano Pure system from Thermo Scientific (Marietta, OH).
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3

Xenopus laevis Protein Extraction Protocol

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Xenopus laevis animals were purchased from Nasco (Fort Atkinson, WI USA). Animals were housed in a pathogen-free environment on a 12 h light – 12 h dark schedule. NP40 was purchased from G-Biosciences (St. Louis, MO USA). 1,1,2 trichloro 1,1,2 trifluroethane (Freon) was purchased from AquaSolutions (Deer Park, TX USA). NuPage 4–12% Bis-Tris Gel, MOPS SDS Running Buffer, SimplyBlue SafeStain, and LDS Samper Buffer were purchased from Novex (Carlsbad, CA USA). Complete, mini protease inhibitor cocktail, provided in EASYpacks, was purchased from Roche Diagnostics (Indianapolis, IN USA). Human Chorionic Gonadotropin (HCG), bovine pancreas TPCK-treated trypsin, urea, NH4HCO3, dithiothreitol (DTT), iodaoacetamide (IAA), cysteine, SDS, and acetone were purchased from Sigma-Aldrich (St. Louis, MO USA). Water was deionized by a Nano Pure system from Thermo scientific (Marietta, OH). Acetonitrile (ACN), formic acid (FA), Pierce C-18 Spin Columns, and Pierce BCA Protein Assays were purchased from Thermo Scientific (Marietta, OH USA). Sep-Pak Vac (1 cc, 100 mg) C-18 Cartridges were purchased from Waters (Ireland). Centrifugal Filter Units with a 30,000 NMWL cut-off were purchased from Millipore (Carrigtwohill, CO USA). Marc’s Modified Ringers (MMR) and MBS were made in-house (See Electronic Supplemental Material (ESM) page S-10).
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4

Preparation of Capillary Electrophoresis Emitters

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LC-MS grade water and methanol were purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Acetic acid, formic acid (FA), and hydrofluoric acid (HF) were purchased from Fisher Scientific (Pittsburgh, USA). HCl, NaOH, 3-(trimethoxysilyl) propyl methacrylate, acrylamide, ammonium persulfate, and ammonium bicarbonate were purchased from Sigma-Aldrich (St. Louis, USA). A Nano Pure system from Thermo Scientific (Waltham, MA, USA) was used to generate deionized water. Uncoated fused silica capillary (50 μm i.d./360 μm o.d.) was purchased from Polymicro Technologies (Phoenix, USA). Emitters were prepared from borosilicate glass capillary (1.0 mm o.d., 0.75 mm i.d. and 10 cm length) from Sutter Instrument Company (Novato, USA).
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5

Reagents and Materials for Analytical Techniques

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Formic acid (FA), acetic acid (HAc), acrylamide, trifluoroacetic acid (TFA), 4,4 -azobis(4-cyanovaleric acid), cyanomethyl [3-(trimethoxysilyl)propyl] trithiocarbonate, bovine pancreas TPCK-treated trypsin, tris(2-carboxyethyl)phosphine (TCEP), and iodoacetamide (IAA) were purchased from Sigma-Aldrich (St. Louis, USA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Uncoated fused silica capillary (50 μm i.d. × 350 μm o.d.) was purchased from Polymicro Technologies (Phoenix, AZ). Water was deionized by a Nano Pure system from Thermo Scientific (Marietta, OH).
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6

Xenopus laevis Embryo Proteomics

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Bovine pancreas TPCK-treated trypsin, urea, ammonium bicarbonate (NH4HCO3), dithiothreitol (DTT), and iodoacetamide (IAA) were purchased from Sigma–Aldrich (St. Louis, MO). Acetonitrile (ACN) and formic acid (FA) were purchased from Fisher Scientific (Pittsburgh, PA). Water was deionized by a Nano Pure system from Thermo scientific (Marietta, OH). iTRAQ 8-plex kits were purchased from AB Sciex (Foster City, CA).
Xenopuslaevis was purchased from Nasco (Fort Atkinson, WI). Mammalian Cell-PE LB™ buffer for embryo lysis was purchased from G-Biosciences (St. Louis, MO). Complete, mini protease inhibitor cocktail (provided in EASYpacks) was purchased from Roche (Indianapolis, IN).
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7

Optimized Capillary Electrophoresis Reagents

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All reagents were purchased from Sigma-Aldrich (St. Louis, MO, USA), unless stated otherwise. Formic acid (FA) and glacial acetic acid were purchased from Fisher Scientific (Pittsburgh, PA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Water was deionized by a NanoPure system from Thermo Scientific (Marietta, OH). Linear polyacrylamide (LPA)-coated fused capillary (50 μm i.d. × 150 μm o.d.) was purchased from Polymicro Technologies (Phoenix, AZ).
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8

Synthesis of Gold Nanoparticles

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EDTA, EDTA disodium salt, and EDTA tetrasodium salt were purchased from Samchun Chemicals (Seoul, Korea). Tetrachloroaurate trihydrate (HAuCl4·3H2O) was purchased from Strem Chemicals, Inc. (Newburyport, MA, USA). Methoxy poly(ethylene glycol)sulfhydryl (mPEG-SH, Mw = 5000) was purchased from SunBio Corp. (Anyang, Korea). Water deionized by a Nano Pure System (Barnstead, Thermo Fisher Scientific, Waltham, MA, USA) was used. The chemicals used for the preparation of the solutions were purchased at the highest grade possible, and used without further purification.
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9

Proteomic Sample Preparation Protocol

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Formic acid (FA), acetic acid (HOAc), bovine pancreas TPCK-treated trypsin, dithiothreitol (DTT), and iodoacetamide (IAA) were purchased from Sigma-Aldrich (St. Louis, USA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). Uncoated fused silica capillary (50 μm i.d. × 350 μm o.d.) was purchased from Polymicro Technologies (Phoenix, AZ). Water was deionized by a Nano Pure system from Thermo Scientific (Marietta, OH).
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10

Preparation of Silica Capillary Emitters

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Acetic acid, 3-aminopropyltrimethoxysilane, isoleucine, glycine, aspartic acid, and ammonium acetate were purchased from Sigma-Aldrich (St. Louis, USA). Formic acid (FA), and acetonitrile (ACN) were purchased from Fisher Scientific (Pittsburgh, USA). Methanol was purchased from Honeywell Burdick & Jackson (Wicklow, Ireland). A Nano Pure system from Thermo Scientific (Waltham, MA) was used to generate deionized water. Uncoated fused-silica capillaries were purchased from Polymicro Technologies (Phoenix, USA). Emitters were prepared from borosilicate glass capillary (1.0 mm o.d., 0.75 mm i.d., and 10 cm length) from Sutter Instrument Company (Novato USA).
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