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12 protocols using tetracyclin

1

Murine Model of Nippostrongylus Infection

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Nippostrongylus brasiliensis was maintained by monthly passages in Lewis rats as previously described40 (link). Infective (iL3) worms were kindly provided by Nicola Harris (EPFL, Switzerland). iL3 larvae were treated for 15 minutes with streptomycin and penicillin (300U/mL; Thermo Fisher Scientific), gentamicin (1.5mg/mL; Sigma) and tetracyclin (30μg/mL; Sigma), washed with PBS and counted under a stereomicroscope. Mice were injected subcutaneously with 400 iL3 in 200μL of sterile PBS using a 21G needle. Mice were sacrificed at day 1, 2 and 6 post-infection and lungs, bronchoalveolar lavage (BAL) and small intestine were collected and analysed.
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2

Genetic Manipulation of Staphylococcus aureus

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Strains and plasmids used in this study are described in Tables 3, 4, respectively.
The Escherichia coli DH5α strain was grown in LB medium supplemented, if necessary, with 100 mg/l ampicillin (Sigma-Aldrich, Buchs, Switzerland). The S. aureus strains were cultivated in Mueller-Hinton broth supplemented with 20 mg/l uracil (MH) and when needed with 10 mg/l erythromycin (MHE), 10 mg/l chloramphenicol (MHC), 2 mg/l tetracyclin (MHT), 240 μg/l of penicillin G (MHP) (Sigma-Aldrich, Buchs, Switzerland), or a combination of chloramphenicol and penicillin G (MHCP). Agar plates contained 13 g/l of agar (Agar bacteriology grade, PanReac AppliChem). Strain PR01 is a derivative of SA564 where the restriction systems have been inactivated to facilitate transformation, and the pyrFE genes have been deleted to facilitate genetic manipulations, but where pSA564 replication remains unchanged (Corvaglia et al., 2010 (link); Redder and Linder, 2012 (link)). Strain PR02 is a derivative of S. aureus RN4220, where the pyrFE genes have been deleted (Redder and Linder, 2012 (link)). Mutants SVK97.1 and VG_J1new were generated from PR01 using the protocol described previously (Redder and Linder, 2012 (link)).
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3

Fetal Bovine Serum and Antibiotic Optimization

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Fetal bovine serum (FBS) and an antibiotic-antimycotic
solution (100×) were purchased from the GIBCO (GIBCO, BRL, Inchinnman
UK). Escort IV reagent, Dithiothreitol (DTT), anti-Rabbit-IgG-cy-3,
Hoechst 33258, TRI-Reagent, testosterone, dihydrotestosterone (DHT),
β-estradiol, and flutamide were purchased from Sigma-Aldrich
(St. Louis, MO, USA). Hydrocortisone, MTT (3-(4,5-dimethyl-2-thiazolyl)
2,5diphenyl-2H-tetrazolium bromide), and cell culture media were purchased
from Himedia (Mumbai India). DNaseI was purchased from NEB, England.
Oxytetracyclin (catalog number-75966), chloramphenicol (catalog number-C0378),
oxacillin (catalog number-28221), streptomycin (catalog number-S6501),
tetracyclin (catalog number-T3258), rifamycin (catalog number-R3501),
ciprofloxacin (catalog number-17850), rotenone (catalog number-R8875),
and BPA (catalog number-239658) purchased from Sigma-Aldrich (St.
Louis, MO, USA) were a kind gift from Prof. S. P. Singh, Banaras Hindu
University, Varanasi, India.
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4

Murine Model of Nippostrongylus Infection

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Nippostrongylus brasiliensis was maintained by monthly passages in Lewis rats as previously described40 (link). Infective (iL3) worms were kindly provided by Nicola Harris (EPFL, Switzerland). iL3 larvae were treated for 15 minutes with streptomycin and penicillin (300U/mL; Thermo Fisher Scientific), gentamicin (1.5mg/mL; Sigma) and tetracyclin (30μg/mL; Sigma), washed with PBS and counted under a stereomicroscope. Mice were injected subcutaneously with 400 iL3 in 200μL of sterile PBS using a 21G needle. Mice were sacrificed at day 1, 2 and 6 post-infection and lungs, bronchoalveolar lavage (BAL) and small intestine were collected and analysed.
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5

Culturing U2OS Cells for Plk1 and Bora Studies

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Human osteosarcoma U2OS cells were grown in Dulbecco’s modified Eagle’s medium (DMEM, Gibco) supplemented with 6% FCS (Lonza), 2 mM l-glutamine, 100 U/ml penicillin, and 100 mg/ml streptomycin. Cell lines expressing LAP-Plk1, AKAP-LAP-Plk1, H2B-LAP-Plk1, and GFP-Bora under the control of tetracycline-inducible were cultured in DMEM containing Tet system approved fetal bovine serum (Lonza). Antibodies that were used were directed against Plk1 (18 (link), 19 (link)), Plk1, Cyclin B1, Actin (all from Santa Cruz), GFP (Roche), Plk1-pT210 (BD), Tubulin (Sigma), Bora (17 (link)), Aurora A (Cell Signaling) Histone H3-pS10, and H2AX (both from Upstate). The following drugs were used: BI 2536 (100 nM, Boehringer Ingelheim Pharma), MLN8054 (1 μM, Millennium Pharmaceuticals), thymidine (2.5 mM, Sigma), caffeine (5 mM, Sigma), adriamycin (0.5 μM, Sigma), nocodazole (250 ng/ml, Sigma), PI (Sigma) puromycin (Sigma, 2 μg/ml), and tetracyclin (Sigma, 1 μg/ml).
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6

Differentiation of LUHMES Cells into Neurons

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Lund Human Mesencephalic (LUHMES) cells were obtained, maintained and differentiated as previously described[23 (link)]. Briefly, proliferating LUHMES cells were cultured in Advanced Dulbecco’s modified Eagle’s medium/F12 (DMEM/F12, Gibco) supplemented with 1xN2 (Gibco), 2 mM L-glutamine (Gibco) and 40 ng/mL recombinant basic fibroblast growth factor (R&D Systems). For differentiation, proliferation medium was replaced by DMEM/F12 containing 1xN2, 2 mM L-glutamine, 1 mM dibutyryl cAMP (Sigma Aldrich), 1 μg/mL tetracyclin (Sigma-Aldrich) and 2 ng/mL recombinant human GDNF (R&D Systems). Two days (D2) after adding differentiation medium, cells were seeded in plates (Nunclon) pre-coated with 50 μg/mL poly-L-ornithine and 1 μg/mL fibronectin (Sigma-Aldrich), and grown at 37°C in humidified 5% CO2 atmosphere.
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7

Antibiotic Susceptibility Testing Protocol

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Antibiotics tested were linezolid, fusidic acid, kanamycin, gentamycin, erythromycin, lincomycin, tetracyclin, vancomycin and ciprofloxacin. Erythromycin and fusidic acid were from Koçak Farma (Tekirdağ, Türkiye), kanamycin, tetracyclin and vancomycin were purchased from Sigma, and commercial injectable preparations were used for the remaining antimicrobials. Agar dilution method was used as described previously [5 ]. Shortly plates were prepared with serial dilution from 64 or 128 mg/L antibiotic concentrations. Inoculum with 5X104 bacteria was placed onto agar using multipoint inoculator. After 16–20 h incubation at 37°C the lowest concentration that inhibits bacterial growth was accepted as MIC. Reference strain S. aureus RN4220 was included to each run.
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8

Differentiation of Human Dopaminergic Neurons

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Human mesencephalon neuronal precursor cells (MESC2.10 cells) were cultured in poly-D-lysine (Sigma, St Louis, MO, USA) coated flasks (75 cm2) in Dulbeccos modified Eagle medium (DMEM)/F12 medium (Gibco, Invitrogen, Calrsbad, CA, USA) supplemented with B27 (Gibco) and Penicillin/streptomycin and human basic FGF 20 ng/ml (Peprotech, Rocky Hill, NJ, USA). To induce neuronal differentiation, cells were cultured for 6 days on poly-D-lysine/laminin (Sigma) coated wells at a density of 30,000 cells /cm2 in a medium containing 1 μg/ml tetracyclin (Sigma) (Lotharius et al. 2002 (link); Di Liberto et al. 2012 (link)). Medium was changed every second day and cell differentiation was monitored by the expression of markers for dopaminergic neurons such as tyrosine hydroxylase and dopamine transporter. Human dopaminergic cells were treated with 50 ng/ml FGF21 and analyzed as described in the text. In some experiments 20 μM nicotinamide (NAM) was used to the cells to inhibit SIRT1. Glial cultures from newborn rodent brains were prepared and cultured in 10% fetal calf serum in DMEM as described previously (Lindholm et al. 1992 (link); Mäkelä et al. 2010 (link)). The human hepatocyte cell line (Huh7) was used as a positive control for FGF21 expression (Do et al. 2012 (link)).
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9

Dopamine D2 Receptor Antagonist Assay

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Fetal bovine serum (FBS), trypsin/EDTA (0.05%/0.02%), ethylene diamine tri acetic acid (EDTA), Dulbecco’s Phosphate Buffered Saline (DPBS), Protease inhibitors cocktail (PI), Tween 20, Tetracyclin, Penicillin–Streptomycin (Pen-Strep) were purchased from Sigma-Aldrich (Munich, Germany). Blasticidin and Hygromycin B were obtained from Invivogen. Tag-Lite® dopamine D2 receptor red antagonist (spiperone—Cy5) was purchased from Cisbio Bioassays. The total protein concentration has been determined using the Pierce™ BCA protein assay kit provided by ThermoFischer Scientific.
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10

Germ-Free Fly Maintenance Protocol

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Flies were rendered germ-free (GF) following the protocol described in49 (link). GF flies were maintained on fly medium supplemented with antibiotics: kanamycin 50μg/mL (Sigma #K1377), ampicillin50μg/mL (Sigma #A0166), tetracyclin 10μg/mL (Sigma #T7660), erythromycin 5μg/mL (Sigma #E5389). Axenicity was confirmed by crushing the flies and plating the lysate on LB Agar (Carl Roth) and MRS Agar (Carl Roth) plates.
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