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16 protocols using p stat3 antibody

1

Immunohistochemical Analysis of Cell Signaling

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Sections were treated with either p‐JAK2 antibody, p‐STAT3 antibody, cyclin D1 antibody (Cell Signaling Technology), CDK6 antibody (Cell Signaling Technology) with neuron‐specific nuclear protein (NeuN) antibody (Chemicon), glial fibrillary acidic protein (GFAP) antibody (Santa), or ionized calcium‐binding adapter molecule‐1 (Iba‐1) antibody (Cell Signaling Technology); either cyclin D1 antibody or CDK6 antibody with p‐STAT3 antibody at 4°C overnight. The sections were then incubated with a secondary antibody (Invitrogen) for 1 h at 22 ± 2°C. The nuclei were stained with DAPI.
For double staining of NeuN, GFAP, Iba‐1, cyclin D1, or CDK6 and TUNEL, slices were incubated with the primary antibodies against NeuN, GFAP, Iba‐1, cyclin D1, or CDK6, respectively, at 4°C overnight, with PBS used as a negative control. Following three washes in PBS, the sections were incubated with fluorescent‐labeled secondary antibodies. Sections were then stained using the TUNEL assay kit according to the manufacturer's instructions and counterstained with DAPI.
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2

Stimulation and Differentiation of Immune Cells

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The following reagents were used for cell stimulation, differentiation or treatment:αCD3 (10 μg/mL; BioLegend, San Diego, CA, 300438), αCD8 (2 μg/mL; BioLegend, 302934), dipyridamole (10 μM, R&D, 0691), IFNγ (20 ng/mL; PeproTech, Rocky Hill, NJ, 300-02), IL-1β (10 ng/mL; PeproTech, 200-01B), IL-2 (10 ng/mL; PeproTech, 200-02), IL-4 (20-25 ng/mL; PeproTech, 200-04), IL-6 (10 ng/mL; PeproTech, 200-06), IL-12 (10 ng/mL; PeproTech, 200-12), IL-23 (10 ng/mL; PeproTech, 200-23), ionomycin (10 μg/mL; Sigma, I0634), LPS (20 ng/mL to 1 μg/mL, Invivogen, tlrl-3pelps), M-CSF (10-25 ng/mL; PeproTech, 300-25), NBMPR (1 μM; R&D, 2924), PHA (4 μg/mL; Sigma, L1686), PMA (1 μg/mL; Sigma, P1585), transforming growth factor β (1 ng/mL; Miltenyi, 130-095-067), TNF-α (50 ng/mL; PeproTech, 300-01A), tofacitinib citrate (Tofa, 10-500 nM; MedChemExpress, HY-40354A), SLC29A1/ENT1 antibody (LSBio, #LS-B3385), and pSTAT3 antibody (Cell Signaling Technology, Danvers, MA; 9145).
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3

Western Blot Analysis of Protein Targets

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Western blot analysis was performed as described previously [61 (link)]. The primary antibodies used were as follows: ENO1 antibody (mouse; #MAB11222; Abnova, Taipei, Taiwan), STAT3 antibody (mouse; #9139; Cell Signaling Technology), p-STAT3 antibody (rabbit; #9145; Cell Signaling Technology, Danvers, MA, USA), and GAPDH antibody (rabbit; #GB11002; Servicebio, Wuhan, China) at 4 °C overnight. The membranes were visualized using the ECL detection system (SigmaAldrich, Darmstadt, Germany), as described previously (Man et al., 2019).
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4

Immunohistochemical Analysis of IL-6 and pSTAT3

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TMA sections were deparaffinized and rehydrated using xylene and graded concentrations of ethanol. Heat-induced antigen retrieval was performed in citrate buffer (10 mM citrate, pH 6.0). Endogenous peroxidase was blocked in a 0.3% H2O2 solution, after which sections were incubated with primary antibodies overnight at 4°C; rabbit polyclonal IL-6 antibody (1:400, Abcam), rabbit polyclonal to IL-6Rα (1:800, Santa Cruz Biotechnology), and rabbit monoclonal pSTAT3 antibody (1:150, Cell Signaling Technology, clone Tyr705). The antibodies were detected using HRP-labeled secondary (goat anti-rabbit) and tertiary (rabbit anti-goat) antibodies for 30 min at RT (1:100, DAKO,), and visualized with 3,3-diaminobenzidine. Hematoxylin was used for counterstaining.
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5

Western Blot Analysis of IL-32, STAT3, and Bax

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After IR, the RIPA lysis buffer was used to lyse the cells. After the protein concentration was confirmed by the BCA protein detection kit (Beyotime, Shanghai, China), the proteins of the same concentration were separated using 10% SDS-PAGE and then transferred to PVDF membrane (Millipore, USA). Following the blocking step using 5% milk, antibodies were added to the membranes overnight at 4°C, including IL-32 antibody from Proteintech, USA, and STAT3 antibody, p-STAT3 antibody, Bax antibody, and GAPDH antibody from Cell Signaling Technology, USA. Subsequently, the membranes were incubated with the secondary antibodies (Cell Signaling Technology, USA) at room temperature for 2 hours. Immunoblotting protein was detected by enhanced chemiluminescence.
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6

Western Blot Analysis of STAT3 Signaling

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Western blot experiments were performed as previously reported (Xue et al., 2017 (link); Qin et al., 2018 (link)). In brief, 3 × 105 cells were cultured in 6-cm dishes treated with specific concentrations of SDL-1 (0, 10, 20, and 40 μM) for 24 h. And then all cells were lysed in RIPA lysis buffer (Absin Bioscience Inc., Shanghai, China) containing protease inhibitor mixture (PMSF). The cell lysates were quantified by the BCA Protein Assay Kit (Absin, Shanghai, China). Equal amounts of protein were resolved by SDS-PAGE and transferred onto nitrocellulose membranes (Bio-Rad, Hercules, CA, United States). Block the membranes in 5% skim milk at room temperature and incubated with primary antibody overnight at 4 °C followed by incubation with appropriate secondary antibody at room temperature. Antibodies used are as follows: STAT3 antibody (Cell Signaling Technology, #12640S), p-STAT3 antibody (Cell Signaling Technology, #49081S), and GADPH antibody (Proteintech, #60004-1-Ig). The protein bands were detected by ECL Chemiluminescent Substrate Reagent Kit (Biosharp, Hefei, China) and scanned using the ImageQuant 800 (Amersham, United Kingdom).
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7

ChIP-seq Protocol for pSTAT3 Analysis

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ChIP methodology was previously described (Masri et al., 2014 (link)). pSTAT3 antibody used for ChIP was obtained from Cell Signaling technology.
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8

Quantifying pSTAT3 Binding via ChIP-qPCR

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To analyze the pSTAT3 binding ability, we added 5 μg of pSTAT3 antibody (Cell Signaling Inc., Danvers, MA) to perform chromatin immunoprecipitation (ChIP) (Merck). Two microliters of ChIP samples were used for qPCR analysis, as described previously,37 using gene‐specific primers (Table 1). For the ChIP data, we adjusted the signals to IgG control. To analyze the ChIP‐qPCR, the Ct minus the Ct from input control to obtain the ΔCT, and then the ΔCT minus the ΔCt from negative control IgG to obtain the ΔΔCT. The fold change was converted from ΔΔCT by 1.94ˆ(ΔΔCt).
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9

Western Blot Analysis of STAT3, p-STAT3, and PCNA

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Liver tissues extracts were prepared from liver cancer tissue specimens and the cell protein from HUVEC treated with the RIPA buffer. Then, an equal amount of protein (50 μg) was loaded onto 10% SDS-PAGE and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% skimmed dried milk buffered for 2 hours at 25°C and incubated with primary antibodies against STAT3 rabbit mAb (dilution, 1 : 1,000; cat. no. 9959; Cell Signaling Technology, Inc., Danvers, MA, USA), p-STAT3 antibody (dilution, 1 : 1,000; cat. no. 9914; Cell Signaling Technology, Inc.), and PCNA antibody (dilution, 1 : 1,000; cat. no. 2586; Cell Signaling Technology, Inc.), overnight at 4°C. Next, the membranes were washed and incubated with horseradish peroxidase-conjugated secondary antibody for 2 hours at 25°C. The membranes were washed four times with tris-buffered saline with Tween-20 and detected by a fluorescence visible imaging system BIO-RAD imaging system (BIO-RAD, Hercules, CA, USA). The intensity of each band was evaluated by the densitometry test using Image Pro Plus 4.5 software (Media Cybernetics, Inc., Bethesda, MD, USA). The quantification was normalized to the comparable value of GAPDH expression.
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10

ChIP Assay for p-STAT3 Binding in HEGBC Promoter

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ChIP assay was performed with the EZ-Magna ChIP A/G (17–10,086, Millipore) and a p-STAT3 antibody (5 μg per reaction; 9131, Cell Signaling Technology, Boston, MA, USA) in accordance with the manufacturer’s instruction. ChIP-derived DNA was quantified using qRT-PCR to detect enrichment of chromatin. The sequences of the primers were as follows: for the − 668 site of HEGBC promoter, 5’-CACACTGGATTTGTTTCTG-3' (forward) and 5′-GGGTGGTTGGGTTTTTTTT-3' (reverse); for the − 930 site of HEGBC promoter, 5’-CTGCCAACCTGGAAGAAA-3' (forward) and 5’-TTAGGGATTAGGAACCCC-3' (reverse); for the − 1211 site of HEGBC promoter, 5’-ATGTAGTATCATGAGCCTGGG-3′ (forward) and 5’-GCAAAGTTATGGAAGCCGTG-3′ (reverse); for the − 1556 site of HEGBC promoter, 5’-GCAAAGAGAGGCAGGAGT-3′ (forward) and 5’-TGCTGGGTAAATGAGGACA-3′ (reverse); for the distal non-binding site (negative control, NC) of HEGBC promoter, 5’-GTTGTCTCATTGTGTCCC-3′ (forward) and 5’-TGTGTGTTTTTCCCTCTTG-3′ (reverse).
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