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3 protocols using rag b

1

Comprehensive Antibody Reagents for Cellular Signaling Analysis

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Antibodies against pS6K (T389) (#9205), S6K (#9202), pS6 (S240/244) (#2215), S6 (#2217), pAkt (T308) (#13038), pAkt (S473) (#4060), AKT (4691), p4E-BP1 (S65) (#9456), 4E-BP1 (#9644), RagA (#4357), RagB (#8150), RagC (#9480), Sestrin2 (#8487), MIOS (#13557), EEA1 (#3288, used for immunofluorescence (IF)), Lamp1 (#9091, used for IF) and Rab7 (#9367, used for IF) were purchased from Cell Signaling Technology. Lamp2 mouse monoclonal antibody (H4B4, for human cells) and Lamp2 rat-monoclonal antibody (GL2A7, for mouse cells) for IF were obtained from Abcam. Anti-FLAG (F1804, used for IF), anti-HA (3F10), and anti-PMP70 (SAB4200181, used for IF) were obtained from Sigma. WDR24 (20778-1-AP, used for IP) and Sestrin2 (10795-1-AP, used for IP) antibody was purchased from Proteintech. Antibodies against SZT2 (sc-242153), NPRL2 (sc-376986), SEC13 (sc-514308) and WDR59 (sc-137927, only used in immunoblotting of WDR59 in MEFs) were obtained from Santa Cruz. SEH1L (ab187307) antibody was form Abcam. The rabbit WDR59 monoclonal antibody used in IF experiments (1:100, validated in this study with knockout cells, Extended Data Fig. 5b) and immunoblotting experiments (1:1000) in HEK293T was kindly provided by Jianxin Xie from Cell Signaling Technology. This antibody only recognized WDR59 from human cells, but not MEFs. Anti-NPRL3 (NBP1-88447, used for IP) was obtained from Novus Biologicals.
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2

Comprehensive Signaling Pathway Analysis

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Antibodies recognizing pan-AKT, p-AKT (S473), GSK3β, p-GSK3β (S9), TSC2, p-TSC2 (T1462), S6K, p-S6K (T389), S6, p-S6 (S235/6), PRAS40, ULK1, Rag A, Rag B, Rag C, AMPK, cleaved PARP, and Mcl-1 were from Cell Signaling Technology. β-tubulin antibody was from Sigma-Aldrich. XPB (TFIIH p89 S-19), p53, c-Myc, and GFP antibodies were from Santa Cruz. puromycin antibody was from KeraFAST. REDD1/DDIT4 antibodies were from Novus and Bethyl. C-FLIP antibody was from Enzo Life Sciences. All antibodies were used at final concentrations of 1:1000 – 1:2000 except for cleaved PARP, c-Myc, p-TSC2, ULK1, and XPB (1:500), AMPK, P70S6K, and TSC2 (1:750), and β-tubulin, S6, and p-S6 (1:4000). DMSO, cycloheximide, puromycin, rapamycin, bafilomycin A1, and MG-132 were from Sigma-Aldrich. Hygromycin B was from Corning. Hexadecylsulfonylfluoride (HDSF) was from Santa Cruz. TW-37 was from Selleckchem. Torin1 was a kind gift from David Sabatini and Nathanael Gray. Smac mimetic was a kind gift from Xiaodong Wang.
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3

Comprehensive Signaling Pathway Analysis

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Antibodies recognizing pan-AKT, p-AKT (S473), GSK3β, p-GSK3β (S9), TSC2, p-TSC2 (T1462), S6K, p-S6K (T389), S6, p-S6 (S235/6), PRAS40, ULK1, Rag A, Rag B, Rag C, AMPK, cleaved PARP, and Mcl-1 were from Cell Signaling Technology. β-tubulin antibody was from Sigma-Aldrich. XPB (TFIIH p89 S-19), p53, c-Myc, and GFP antibodies were from Santa Cruz. puromycin antibody was from KeraFAST. REDD1/DDIT4 antibodies were from Novus and Bethyl. C-FLIP antibody was from Enzo Life Sciences. All antibodies were used at final concentrations of 1:1000 – 1:2000 except for cleaved PARP, c-Myc, p-TSC2, ULK1, and XPB (1:500), AMPK, P70S6K, and TSC2 (1:750), and β-tubulin, S6, and p-S6 (1:4000). DMSO, cycloheximide, puromycin, rapamycin, bafilomycin A1, and MG-132 were from Sigma-Aldrich. Hygromycin B was from Corning. Hexadecylsulfonylfluoride (HDSF) was from Santa Cruz. TW-37 was from Selleckchem. Torin1 was a kind gift from David Sabatini and Nathanael Gray. Smac mimetic was a kind gift from Xiaodong Wang.
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