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Spd131dda speedvac concentrator

Manufactured by Thermo Fisher Scientific
Sourced in United States

The SPD131DDA SpeedVac Concentrator is a laboratory equipment designed for concentrating liquid samples by evaporation. It uses a combination of vacuum and controlled temperature to efficiently remove solvents from samples, leaving behind the desired concentrate.

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4 protocols using spd131dda speedvac concentrator

1

Polyphenolic Profiling of Tomato Samples

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For the metabolic analyses, each sample consisted of 20-pooled fruits per plot. The extraction of the polyphenolic fraction was carried out according to the procedure reported by Choi et al. (2011) (link) with some changes. Briefly, frozen tomato powder (3 g) was weighed, placed into a 50 ml Falcon tube, and extracted with 15 ml of 70% methanol into an ultrasonic bath (Branson 5200, Ultrasonic, Corp.) for 30 min at 30°C. The mixture was centrifuged at 20000 g for 10 min at 4°C, and the supernatant was collected, while the pellet was re-extracted for the second time as previously described. An aliquot (500 μl) of the methanolic extract was stored at -20°C until further analyses, while 25 ml of extract were dried by rotary evaporator (Buchi R-210, Milan, Italy) at 30°C for 10 min and dissolved in 70% methanol (2 ml). Then, the extract was transferred in a glass tube and was further dried by using a SpeedVac (Thermo Scientific, Savant, SPD131DDA SpeedVac Concentrator, Waltham, MA, USA). The dried extract was dissolved in 70% methanol (500 μl) obtaining a final concentration of 5 g fresh weight (FW)/ml. The extract was passed through a 0.45 μm Millipore nylon filter (Merck Millipore, Bedford, MA, USA) and stored at -20°C until LC/MS/MS analysis.
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2

Metabolite Extraction from Co-Culture

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Extraction of the unknown metabolite at m/z 339 was tested with 15 different solvents (Table S2). Briefly, P. aeruginosa ΔpqsA and S. aureus cells were grown in co-cultures on agar plates as described for MALDI-TOF MSI. Agar plugs from the interaction zone (highest intensity of m/z 339 in MALDI-TOF MSI) were harvested with the bottom end of a 100 µL pipette tip. For each solvent, plugs from 4 interaction plates were pooled, homogenized with a pipette tip and incubated with 200 µL solvent for 1 h at room temperature. Tubes were centrifuged at 5,000 rpm (Biofuge pico, Heraeus), 150 µL of clean solvent were transferred in a fresh tube, evaporated to dryness in a SpeedVac vacuum concentrator (SPD131DDA SpeedVac Concentrator; Thermo Scientific) and stored at – 20° C.
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3

Extraction and Analysis of Pyochelin Compounds

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Ethyl acetate (EtOAc; J.T. Baker and Fisher Scientific) and Optima-grade methanol (MeOH; Fisher Scientific) were used. P. aeruginosa PAO1 wild type or ΔpqsA cells were grown overnight in LB (RPI) at 37°C with 200 rpm shaking. Bacterial cells were centrifuged at 5,000 rpm (Biofuge pico, Heraeus) and washed with 0.5% chelex treated CAA. New cultures were seeded in 0.5% chelex treated CAA at a starting OD600 of 0.05 and incubated at 37°C with 200 rpm shaking. After 48 h the cultures were centrifuged at 3,800 rpm (Eppendorf Centrifuge 5810 R) for 30 min at room temperature. The supernatant was decanted and filtered using a Nalgene Rapid-flow Filter Unit (0.2 µm aPES membrane; Thermo Scientific). The cell free supernatant was acidified to pH 1.8–2 with 6 M HCl. Pyochelin and pyochelin methyl ester were extracted with 3 volumes EtOAc and evaporated to dryness in a Rotavapor (Büchi; Rotavapor R-300) or a SpeedVac vacuum concentrator (SPD131DDA SpeedVac Concentrator; Thermo Scientific). Dried samples were resuspended in MeOH and stored at – 20° C. Samples were centrifuged for 5 min at 10,000 rpm (Thermo; Sorvall ST 40R) to remove nonsoluble particulates and diluted as needed in MeOH containing 1 µM glycocholic acid.
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4

Liposome Preparation by Dried Film Method

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Liposomes were created using the dried film method [9 (link)]. The DOPHT stored in chloroform was aliquoted into 4½-mL amber vials and dried to a film under a stream of argon and continually dried under vacuum overnight; DOPT stored in a chloroform/methanol 2:1 mixture was also dried to a film under argon and further dried under an overnight vacuum. Overnight vacuum was accomplished using a speed-vacuum condenser equipped with a Savant SPD131DDA SpeedVac concentrator and a RVT4104 refrigerated vapor trap (Thermo Fisher, Rockford, IL, USA). Dried lipid films were then hydrated in a buffer at the appropriate pH and periodically vortexed for nearly an hour. Hydrated lipids were then subjected to five cycles of freezing (ethanol on dry ice) and thawing (50 °C water bath) just prior to extrusion through double-stacked 100 nm pore filter paper housed in a LiposoFast hand-held extruder (Avestin, Inc.; Ottawa, ON, Canada). Liposomes were passed 11 times back and forth through the filters.
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