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7 protocols using primary antibodies against e cadherin

1

Epithelial-Mesenchymal Transition Markers

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Primary antibodies against E‐cadherin, N‐cadherin, and vimentin were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies recognizing MMP2, MMP9 and Snail were purchased from Abcam (Cambridge, MA, USA); antibodies against HIF‐1α and β‐actin were acquired from ProteinTech (Wuhan, China). YC‐1 (a HIF‐1α inhibitor) and SB431542 (an inhibitor of the TGF‐β type I receptor) were obtained from Sigma‐Aldrich (St. Louis, MO, USA), and human recombinant TGF‐β1 was purchased from PeproTech (Rocky Hill, NJ, USA).
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2

Protein Expression Analysis of Cell Cultures

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Cells were cultured for 24 h in six‐well plates (5 × 105 cells per plate). The culture medium was removed, cells washed using PBS and treated with RIPA lysis buffer comprised of proteinase inhibitor (Sigma, St.Louis, MO, USA) for 30 min. Proteins were collected from the lysed tissues by centrifuging for 20 min at 12 000 g and the total amount of protein quantified via BCA assay (Pierce, Rockford, IL, USA). After running on a 10% SDS/PAGE gel, protein was transferred to a polyvinylidene difluoride membrane and 5% non‐fat milk was used for a 2‐h blocking step. Further, they were incubated with primary antibodies against E‐cadherin, N‐cadherin and MMP‐2 (1 : 1000; Cell Signaling Technology, Danvers, MA, USA) as well as ZO‐1, Vimentin and MMP‐9 (1 : 1000; Abcam, Cambridge, MA, USA) at 4 °C overnight followed by rinsing and incubating for 2 h with the respective horseradish peroxidase‐labeled secondary antibodies (1 : 5000; Santa Cruz, Santa Cruz, CA). The protein bands were visualized by means of enhanced chemiluminescence (ECL) kits (Abcam). GAPDH was used as a loading control.
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3

Bleomycin-induced Pulmonary Fibrosis Study

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Bleomycin was purchased from Carbosynth. (Compton, UK). The PHMG-P solution was obtained from SK Chemicals (Seongnam, South Korea). CG-745 was synthesized by CrystalGenomics (Seongnam, South Korea). Primary antibodies against E-cadherin, H3 and Ac-H3 were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against α-SMA, Collagen I and PAI-1 were purchased from Abcam, Inc. (Cambridge, UK). N-cadherin was purchased from Bioworld Technology (Louis Park, MN, USA). Anti-rabbit IgG-conjugated horseradish peroxidase (HRP) antibody was purchased from Bethyl (Montgomery, TX, USA).
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4

Apoptosis and Proliferation Assays for Cell Lines

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The fetal bovine serum (FBS) was purchased from Gibco (Grand Island, NY, United States). BCA protein assay kit (No. P0011) and One Step TUNEL Apoptosis Assay Kit (No. C1089) were purchased from Beyotime (Shanghai, China). Transwell assay inserts (No. 354483) were purchased from Corning (Corning New York, NY, United States). Enhanced Chemiluminescence (ECL) was purchased from Thermofisher (Waltham, Massachusetts, United States). 1% crystal violet solution (No. V5265) was purchased from Sigma (St. Louis, MO, United States). Anti-rabbit IgG, HRP-linked Antibody, primary antibodies against E-cadherin, Vimentin, p-AMPKα, p-p44/42 MAPK, p-MEK1/2, p-AKT, AKT, p-mTOR, mTOR, p-IκBα, IκBα, p-NF-κB p65, NF-κB p65 and GAPDH were purchased from Cell Signaling Technology (Danvers, MA, United States). Primary antibody against Wnt 3a was purchased from Abcam (Cambridge, United Kingdom). The catalogue numbers of antibodies were shown in Supplementary Table S1. FITC Annexin V Apoptosis Detection Kit (No. 556547) and DNA Reagent Kit (No. 340242) were purchased from BD Biosciences (San Diego, CA, United States). Cell Titer 96® AQueous One Solution Cell Proliferation Assay (MTS, No. G3581) was purchased from Promega (Madison, WI, United States). The macroporous resin (No. M0032) was purchased from Solarbio Life Science (Beijing, China).
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5

Western Blot Analysis of EMT Markers

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The procedures for western blotting analysis and protein visualization were executed as described previously [24 (link)]. Primary antibodies against DVL3 and β-catenin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Primary antibodies against E-cadherin, ZO-1, N-cadherin, Vimentin, Snail, CD44, CD133, SOX2, c-Myc were gained from Cell Signaling Technology (Danvers, MA, USA). Anti-β-actin (Santa Cruz, CA, USA) was used as a loading control. The horseradish peroxidase (HRP)-conjugated secondary antibody was obtained from ZSGB-bio (Peking, China). The signals were checked by an enhanced chemiluminescence detection kit(Invitrogen, Carlsbad, CA, USA) and Bio-Rad Molecular Imager (Hercules, CA, USA). The relative expression of above proteins was normalized against β-actin using Image J analysis.
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6

Epithelial-Mesenchymal Transition Protein Analysis

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The MGC‐803 cells were seeded into 6‐well plates. Total protein was extracted from treated cells using IP lysis butter. Subsequently, the protein was subjected to SDS‐PAGE separation and electro‐transferation to PVDF membranes. Primary antibodies against E‐cadherin, N‐cadherin, vimentin, Snail, and GAPDH were purchased from Cell Signaling Technology. All the secondary antibodies were obtained from PerkinElmer, Inc.
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7

Protein Expression Profile Analysis

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After the separation by sodium dodecyl sulphate‐polyacrylamide gel (SDS‑PAGE), the cellular protein was transferred to polyvinylidene fluoride (PVDF) membranes (Invitrogen Life Technologies). Followed the blocking with 5% fat‑free milk, the membrane was incubated with primary antibodies against E‑cadherin, vimentin, Wnt5a, p‐β‐catenin, β‐catenin, Met, C‐Jun and GAPDH (all from Cell Signaling Technology, Inc) overnight at 4°C and then incubated with a secondary antibody for 1 hours. Enhanced chemiluminescence kit (Beyotime Institute of Biotechnology) was used to visualize the blots.
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