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12 protocols using integrin α5

1

Antibody panel for cell analysis

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Antibodies for immunoblotting and immunocytochemistry: GAPDH (#437000; Invitrogen), HIF1‐α (#14179S; Cell Signaling Technology), HIF2‐α (#ab207607; Abcam), FN (IB) (#ab23750; Abcam), FN (ICC) (#IST‐9; SCBT), β‐actin (#MA1‐140; Invitrogen), Vinculin (#129002; Abcam), Integrin‐α6 (#MABT356; Millipore Sigma), Integrin‐α5 (#ab150361; Abcam), Integrin‐β1 (#96996; Cell Signaling Technology) Alexa Fluor 568 (#A10037; Invitrogen), and Alexa Fluor 488 (#A11001; Invitrogen). For flowcytometry, Active Integrin‐β1 clone HUTS‐4 (#MAB2079Z; Millipore Sigma) was used. Matrigel™ was purchased from Corning. Protein concentration in lots used varied between 10 and 11.2 mg/ml with an endotoxin level of less than 1.5.
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2

Protein expression and signaling analysis

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Protein samples were electrophoresed on 6–12% SDS polyacrylamide gel and transferred to polyvinylidene difluoride membrane (PVDF, Merck Millipore). The PVDF was blocked in 5% nonfat milk and incubated with primary antibodies against ZNF488 (Abcam), Collagen IV (Abcam), integrin α5 (Abcam), p-FAK(Y397) (Cell Signaling Technology (CST)), FAK (CST), ERK 1/2(Cell Signaling Technology), p-ERK1/2 (CST), Akt (CST), p-Akt (CST), Cyclin D1 (Abcam), Cyclin D2 (Abcam), Cyclin E (C-19) (Santa Cruz), α-tubulin (CST) and Cleaved caspase 9 p10 (Santa Cruz) overnight at 4°C. The PVDF membrane was incubated with anti-mouse or rabbit IgG secondary antibodies. α-tubulin served as the loading control. The band on the PVDF membrane was observed using an electrochemiluminescence kit (Pierce).
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3

Periodontal Ligament Cell Protein Expression

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Periodontal ligament cells were treated with growth factors and harvested after 38 hours. Aliquots of total protein (40 μg) from each sample were subjected to immunoblotting as described previously16 using antibodies specific to integrin α3 (1:500; Sigma‐Aldrich), integrin α4 (1:1000; Cell Signaling, Beverly, CA, USA), integrin α5 (1:1000; Abcam, Cambridge, MA, USA), pro‐collagen type I (1:1000; Developmental Studies Hybridoma Bank), fibronectin (1:500; Abcam), vitronectin (1:1000; Proteintech Group, Rosemont, IL, USA), and GAPDH (1:3000; Cell Signaling) that served as a loading control. The signal intensities were quantified by densitometric analysis using Image J.
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4

Western Blot Analysis of Cellular Proteins

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Cells were collected and lysed in cold RIPA buffer, and the protein concentration was determined using a bicinchoninic acid assay kit (Pierce Biotechnology, Waltham, MA, USA). Protein samples were electrophoresed on 10% sodium dodecyl sulfate polyacrylamide gel and transferred to a polyvinylidene difluoride membrane (PVDF, Merck Millipore). The PVDF membrane was blocked in 5% nonfat milk buffer and then incubated with primary antibodies against E-cadherin (1:500, BD Biosciences), fibronectin (1:500, BioWorld), Pdx-1 (1:500, Abcam), Ki67 (1:500, Santa Cruz), extracellular signal-regulated kinase (ERK) 1/2 (1:500, Abcam), p-ERK1/2 (1:500, Cell Signaling Technology, Danvers, MA, USA), focal adhesion kinase (FAK, 1:500, Cell Signaling Technology), p-FAK (1:500, Cell Signaling Technology), Akt (1:500, Cell Signaling Technology), p-Akt (1:500, Cell Signaling Technology), integrin α5 (1:500, Abcam), integrin β1 (1:500, Abcam), cyclin D1 (1:500, Santa Cruz), p27 (1:500, Cell Signaling Technology), and β-actin (1:1,000, Santa Cruz) overnight at 4°C. The PVDF membrane was washed in PBST and incubated with horseradish peroxidase-conjugated secondary antibodies (1:2,000, Santa Cruz) at 37°C for 1 hour. The target protein band on the PVDF membrane was observed using an electrochemiluminescence kit (Pierce).
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5

Quantitative Western Blot Analysis

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For WB, Samples were loaded onto 10% SDS-polyacrylamide gels, transferred to polyvinylidene difluoride membranes (Millipore Corp, Bedford, MA, USA) and incubated with primary CRT, pEGFR1173, pEGFR-Tyr1068 (pEGFR1068) (Abcam), pEGFR-Tyr845 (pEGFR845) (Abcam), Fibronectin, Integrinβ1, Integrinα5 (Abcam), c-Myc (Cell Signaling Technology, Danvers, MA, USA), pERK (Cell Signaling Technology), Caveolin-1 (Proteintech), E-cad, N-cadherin (N-cad, Abcam), Vimentin (Proteintech), MMP9 (Proteintech), ZO-1 (Proteintech), β-catenin (Proteintech), GATA3 (Proteintech), alpha smooth muscle actin (a-SMA, Abcam) and GAPDH (Proteintech) antibodies overnight at 4 °C. Membranes were incubated with horseradish peroxidase-conjugated monoclonal secondary antibody (Santa Cruz, CA, UK) at room temperature for 1.5 h, respectively. Immunoreactive protein bands were visualized with an ECL Detection Kit (Thermo scientific, Rockford, IL, USA). Each experiment was repeated three times.
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6

Western Blot Protein Analysis of Breast Tissues

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30 μg proteins extracted from normal breast tissues, breast cancer tissues or cell lines were separated by sodium dodecyl sulfate-polyacrylamide gelelectrophoresis, and then transferred to nitrocellulose membrane (Millipore, Bedford, MA). The membranes were blocked by 5% skimmed milk and then incubated overnight with primary antibodies, including anti-TFPI2 antibodies (1:1500, Abcam), TWIST (1:2000, Abcam), integrin α5 (1:2500, Abcam), GAPDH (1:3000, Abcam) at 4 °C. Lastly, the immunoreactivities were detected by enhanced chemiluminescence (KeyGen, Nanjin, China) after incubating with HRP labeled secondary antibody (1:5000; Abcam).
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7

Quantifying Integrin and Transporter Levels

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For evaluation of the protein levels of α5 and αv integrins and NaBC1 transporter, we used In-Cell Western quantification. 10.000 cells cm−2 of C2C12 cells were seeded onto FN-coated substrates during 1.5 h at 37 °C and 5% CO2. Cells were then fixed using fixative buffer (10 mL)formaldehyde, 90 mL PBS, 2 g sucrose) at 37 °C for 15 min and then permeabilized in cold methanol at 40 °C for 5 min. Cells were then blocked in 0.5% blocking buffer (non-fat dry milk powder in 0.1% PBST buffer) at RT for 2 h followed by 3 washes of 10 min with 0.1% PBST. Cells were then incubated with primary antibodies: NaBC1 (abcam, 1:200), integrin α5 (abcam, 1:500) and anti-integrin αv (abcam, 1:500) diluted in blocking buffer at 4 °C overnight. After 3 washes of 10 min with 0.1% PBST buffer, cells were incubated with 1:800 diluted infrared-labeled secondary antibody IRDye 800CW (LI-COR) and 1:500 diluted CellTag 700 Stain (LI-COR) at RT for 1 h, followed by 5 washes of 10 min with 0.1% PBST. Samples were then dried overnight at room temperature. Infrared signal was detected using an Odyssey infrared imaging system. Four biological replicas were analyzed.
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8

Characterizing Periodontal Ligament Cell Adhesion

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Periodontal ligament cells were treated with growth factors, harvested after 38 hours, and fixed in 3.7% formaldehyde in phosphate‐buffered saline (PBS). The samples were subsequently incubated with 1:100 dilution of primary antibodies for Golgi apparatus (MBL, Nagoya, Japan), integrin α3 (Sigma‐Aldrich), integrin α5 (Abcam), fibronectin (Abcam), laminin‐5 (Abcam) and vitronectin (Proteintech Group), followed by the addition of a 1:200 dilution of Alexa Fluor 488‐ or 594‐labelled secondary antibodies (Thermo Fisher Scientific). Negative control samples were incubated with an isotype‐control IgG antibody (Cell Signaling) in place of the primary antibody. Nuclear staining was performed with 4′,6‐diamidino‐2‐phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA). Staining signals were visualized using a confocal fluorescence microscope (ZEISS LSM780; Carl Zeiss, Oberkochen, Germany). The composite image was obtained by superimposing the images from different fluorescent channels. The x‐z axis images (vertical sections) of the cells were acquired by reconstructing the x‐y images using the ZEN 2012 software Ver.1.1.2.0 (Carl Zeiss).
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9

Immunohistochemical Analysis of Femoral Artery

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After fixation and rehydration of 6 µm sections from the femoral artery, the slides were pre-incubated with 10% normal goat serum (Zymed® Laboratories Inc., San Francisco, CA, USA) and then incubated with antibodies against α-SMA (Sigma-Aldrich, Munich, Germany), CD31 (BD Pharmingen, Franklin Lakes, NJ, USA), CD45 (BD Pharmingen), CD68 (Serotec, Oxford, UK), Ki-67 (Abcam, Cambridge, UK), Integrin α5 (Abcam), or Sirt1 (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Ensuing incubations were carried out with Cy5- or Cy3-coupled secondary antibodies (Molecular Probes, Eugene, OR, USA) and counterstained with nuclear 4.6-diamidino-2-phenylindole (DAPI) (Linaris, Wertheim, Germany). Monoclonal antibodies to α-SMA were labelled directly with Cy3. Negative controls were conducted by substituting the primary antibody with an appropriate species- and isotype-matched control antibody (Santa Cruz Biotechnology). The number of apoptotic SMC was quantified by terminal deoxynucleotidyl transferase-mediated dUTP nick end-labelling (TUNEL) according to the supplier's instructions (in situ cell death detection kit, Roche).
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10

Western Blot Analysis of Cell Signaling

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Protein samples were separated in NuPAGE 4–12% Bis-Tris protein gels (#NP0336BOX; ThermoFisher Scientific) and transferred to polyvinylidene fluoride membrane (#LC2002; ThermoFisher Scientific) for antibody probing. The blots were blocked with 5% blocker (#1706406; Bio-Rad, Hercules, CA) in Tris-buffer saline containing 0.05% Tween-20. Blots were then incubated with primary antibodies overnight at 4°C before incubating with horseradish peroxidase–conjugated secondary antibodies for 1 h at room temperature. The following antibodies were used in Western blotting: Ror2 (1:1000; Developmental Studies Hybridoma Bank), integrin α5 (1:1000; #ab150361; Abcam), fibronectin 1 (1:1000; #610077; BD Biosciences), FAK (1:1000; #3285; CST), phospho-FAK (1:1000; #44-626G; ThermoFisher Scientific), ROCK1 (1:1000; #4035; CST), RhoA (1:1000; #2117; CST), cofilin 1 (1:1000; #5175; CST), MLCK (1:1000; #M7905; Sigma-Aldrich), total MLCII (1:1000; #3672; CST), p-MLCIIThr18/Ser19 (1:1000; #3674; CST), p-MLCIISer19 (1:1000; #3671; CST), and GAPDH (1:2500; #5174; CST).
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