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Agilent cytogenomics software 4

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Agilent CytoGenomics software 4.0.3.12 is a bioinformatics software suite designed for the analysis and visualization of cytogenetic and genomic data. The software provides core functionalities for data management, analysis, and reporting.

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CytoGenomics software (43 citations) Agilent CytoGenomics software (23 citations) Agilent CytoGenomics (6 citations) Agilent Cytogenomics 4.0.3.12 software (4 citations) CytoGenomics 4.03.12 (2 citations)

2 protocols using agilent cytogenomics software 4

1

CNV Detection using Microarray Data

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We converted the raw data using FEATURE EXTRACTION software 10.7 and analyzed CNVs using Agilent CytoGenomics software 4.0.3.12 (Agilent technologies, Santa Clara, CA, US). The human genome assembly NCBI36/hg18 was used as a reference. The analysis settings for CNVs calling were Aberration Detection Method 2 algorithm, centralization threshold 6, bin size 10, and minimum number of adjacent probes 3. Thresholds were set via log2-ratio (log2R) (for detecting duplications, log2R ≥ 0.25; for detecting deletions, log2R ≤ -0.25).
Qiu S., Qiu Y., Li Y., Zhu X., Liu Y., Qiao Y., Cheng Y, & Liu Y. (2023). Nexus between genome-wide copy number variations and autism spectrum disorder in Northeast Han Chinese population. BMC Psychiatry, 23, 96.
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2

CNV Detection Using Agilent CytoGenomics

Check if the same lab product or an alternative is used in the 5 most similar protocols
We converted the raw data using FEATURE EXTRACTION software 10.7 and analyzed CNVs using Agilent CytoGenomics software 4.0.3.12 (Agilent technologies, Santa Clara, CA, US). The human genome assembly NCBI36/hg18 was used as a reference. The analysis settings for CNVs calling were Aberration Detection Method 2 algorithm, centralization threshold 6, bin size 10, and minimum number of adjacent probes 3. Thresholds were set via log2-ratio (log 2 R ) (for detecting duplications, log 2 R ≥ 0.25; for detecting deletions, log 2 R ≤-0.25).
Qiu S., Cong X., Li Y., Shi J., Qiu Y., Guo Y., Gu Y., Li Y., Zhu X., Liu Y., Qiao Y., Cheng Y., & Liu Y. (2021). Nexus Between Genome-Wide Copy Number Variations and Autism Spectrum Disorder in Northeast Han Chinese Population.
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