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20 protocols using silica gel gf254

1

Purification and Characterization of Organic Compounds

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All conventional reagents and solvents are purchased directly from commercial companies and no further purification is required. Organic solvents were purchased from Sinopharm chemical reagent Co., Ltd. and purified by distillation and moisture was excluded from the glass apparatus using CaCl2 drying tubes. Throughout this study, silica gel H (200–300 mesh; Qingdao Marine Chemical Factory, Qingdao, China) was used for the column chromatography. For thin layer chromatographic (TLC) plates, Silica gel (GF254) (Qingdao Marine Chemical Factory, Qingdao, China) were used for thin layer chromatographic (TLC) analysis, and all of the spots and bands were detected by UV irradiation (254, 365 nm). The intermediates and products were characterized by electrospray ionization mass spectrometry (TripleTOF5600þ; AB SCIEX Pte. Ltd., Boston, MA, USA), 1H NMR and 13C NMR (Bruker AM500 spectrometer; Bruker Corporation, Berne, Switzerland). The derivatives were dissolved in 100% dimethyl sulfoxide (DMSO; Beyotime Biotechnology, Haimen, China), stored at 4 °C prior to antiviral evaluation, and used within 6 months. For solubility, the stock solutions, at a concentration of 50 mg/mL, were sonicated for approximately 10 min to ensure that the derivatives were fully dissolved and mixed.
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2

Novel Chemical Compound Characterization

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The nuclear magnetic resonance (NMR) spectra were measured on a Bruker Biospin AV400 instrument at 400 MHz for 1H NMR spectra and 100 MHz for 13C NMR spectra, with deuterated dimethylsulfoxide (DMSO-d6) as the solvent. The high-resolution mass spectra were acquired with a Q-TOF mass spectrometer (Impact II, Bruker). Thin-layer chromatography (TLC) was performed on silica gel plates (silica gel GF254, Qingdao Marine Chemical Plant, China) visualized at 254 nm. The derivatives were purified by flash column chromatography in silica gel (particle size 200–300 mesh) to get the pure compounds. 3D-QSAR procedures were carried out using SYBYL-X 2.0 (Tripos, Inc.). A multimode reader (Infinite M200, Tecan) was used to detect the cytotoxicity.
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3

Spectroscopic Analysis of Compounds

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The nuclear magnetic resonance (NMR) spectra were recorded on Bruker 400 MHz NMR spectrometer. HRESIMS analyses were carried out on an LTQ-Orbitrap XL (Thermo Scientific, Waltham, MA, USA). HPLC was performed on an Agilent 1200. Semi-preparative HPLC was performed on a Waters 1525 Binary HPLC Pump (Agilent Eclipse XDB-C18, 5 µm, 9.4 × 250 mm) with a Waters 996 Photodiode Array Detector (Milford, MA, USA). Sephadex LH-20 was obtained from GE Amersham Biosciences (Piscataway, NJ, USA). Column chromatography (CC) was performed over reversed-phase (RP) C18 silica gel (Merck, Darmstadt, Germany). Silica gel GF254 for thin-layer chromatography (TLC) was purchased from Qingdao Marine Chemical Ltd. (Qingdao, China). Optical rotations were measured on an Auton Paar MCP200 Automatic Polarimeter. IR spectra (KBr) were obtained on a Thermo Fisher Scientific Nicolet 6700 FT-IR spectrometer (Waltham, MA, USA). Compounds were visualized under UV light and by iodine vapor.
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4

Spectroscopic Analysis of Chemical Compounds

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Optical rotations were measured with a P-2000 digital polarimeter (JASCO, Hachioji, Japan). UV spectra were obtained with a NADE Evolution 201 spectrophotometer (ThermoFisher, Waltham, MA, USA). IR spectra were recorded on a Nicolet iS5 IR spectrometer (ThermoFisher, Waltham, MA, USA).1H-NMR (600 MHz) and 13C (150 MHz) spectra were measured with a Varian 600 MHz (Palo Alto, CA, USA) spectrometer. Chemical shifts were reported in ppm, while using the signals of the residual solvent as internal reference (δH 3.31 and δC 49.0 for CD3OD, δH 7.26 and δC 77.1 for CDCl3). HRESIMS data were recorded on an Agilent Technologies 6520 Accurate Mass Q-TOF LC/MS spectrometer (Agilent Technologies, Santa Clara, CA, USA). Medium-pressure liquid chromatography (MPLC) was performed on a FLEXA Purification System (Agela Technologies, Tianjin, China) using a ODS column. Column chromatography (CC) was carried out with silica gel (200–300 mesh, Qingdao Marine Chemical Inc. Qingdao, PR China) and Sephadex LH20 (Amersham Biosciences, Piscataway, NJ, USA). CC fractions were analyzed by TLC (silica gel GF254, Qingdao Marine Chemical Factory, Qingdao, China). Semi-preparative HPLC (Waters 600, Milford, MA, USA) equipped with a Waters 2996 detector and a C18 column (250 mm × 20 mm ID, 5 µm; YMC Co. Ltd., Tokyo, Japan).
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5

Physicochemical Characterization of Compounds

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Melting points were measured using a Yanaco micromelting apparatus (Model I-300). UV data were obtained on a Shimadzu UV3000 spectrophotometer (Beijing, China). A UR-20 spectrophotometer was used for scanning the IR spectra of KBr pellets. Nuclear magnetic resonance (NMR) spectra were recorded on an AM-400 spectrometer (Bruker Avance DRX, Switzerland). Chemical shifts (δ) are expressed in ppm with reference to the solvent (tetramethylsilane, TMS) signals. EI-MS (electrospray ionization-mass spectrum) were measured on a JMS-DX 300 spectrometer. Column chromatography was performed with silica gel (Qingdao Marine Chemical Factory (Qingdao, China)). Fractions were monitored using TLC (silica gel GF 254; Qingdao Marine Chemical Factory), and spots were visualized using iodine vapor.
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6

Structural Characterization of Compounds

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One- and two-dimensional NMR spectra were measured on Bruker AVIII-500 NMR spectrometer (Bruker Corporation, Karlsruhe, Germany). The chemical shifts of 1H (500 MHz) and 13C (125 MHz) NMR data were given in δ (ppm) and referenced to the solvent signal (CDCl3, δH 7.26 and δC 77.16; acetone-d6, δH 2.05 and δC 29.84). HRESIMS data were collected on an Agilent 6210 TOF LC-MS instrument (Agilent Technologies Inc., Palo Alto, CA, USA). Optical rotation value was recorded by a JASCO P-1020 digital polarimeter (JASCO, Tokyo, Japan). UV and IR data were measured on a UV-2550 spectrometer (Shimadzu, Kyoto, Japan) and Nicolet 380 Infrared Spectrometer (Thermo Electron Corporation, Madison, WI, USA), respectively. The ECD data were collected on JASCO J-715 spectropolarimeter (JASCO, Tokyo, Japan). The semi-preparative HPLC was conducted on a Waters 1525 HPLC equipped with a XBridge C18 column (5 μm, 250.0 mm × 10.0 mm; Waters Corporation, Milford, MA, USA). Thin-layer chromatography (TLC) was performed on pre-coated glass plates (silica gel GF254, Qingdao Marine Chemical Inc., Qingdao, China). Column chromatography (CC) was performed on silica gel (45–75 µm; Qingdao Marine Chemical Inc., Qingdao, China), ODS (40–60 µm; Osaka Soda Co., Ltd., Hyogo, Japan) and Sephadex LH-20 (Cytiva, Uppsala, Sweden).
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7

Spectroscopic Analysis of Compounds

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UV spectra were obtained on a Shimadzu UV-1700 spectrometer (Shimadzu, Tokyo, Japan). Optical rotations were measured by using a JASCO DIP-370 digital polarimeter (JASCO Analytical Instrumentals, Easton, MD, USA). ECD spectra were recorded on a Bio-Logic Science MOS-450 spectrometer (Bio-Logic Science Instruments, Seyssinet-Pariset, France). HRESIMS experiments were carried out on a Bruker micro Q-TOF mass spectrometer. The NMR spectra were recorded by Bruker ARX-400 and AV-600 spectrometers (Bruker Corporation, Bremen, Germany) with trimethylsilane (TMS) as the internal standard and the chemical shifts were indicated as δ values (ppm). Semi-preparative HPLC was achieved with a Shimadzu LC-20A equipped with an SPD-20A UV/VIS detector (Shimadzu, Kyoto, Japan) using a YMC Pack ODS-A column (250 × 10 mm, 5 μm, YMC Company, Kyoto, Japan). Column chromatography was carried out on silica gel (100-200 or 200-300 mesh, Qingdao Marine Chemical Inc., Qingdao, China) and ODS gel (60-80 μm, Merck, Germany). silica gel GF254 (Qingdao Marine Chemical, Ltd., Qingdao, China) was used for thin-layer chromatography (TLC).
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8

Spectroscopic Characterization of Natural Products

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Infrared spectra were recorded with a Nicolet IS5 FT-IR spectrophotometer (Waltham, MA, USA). The UV data were obtained on a Thermo Scientific Genesys 10S spectrophotometer (Madison, WI, USA). Optical rotations were measured with an Anton Paar MCP 200 Automatic Polarimeter (Graz, Austria). The NMR data were performed on a Bruker Avance-500 MHz spectrometer (Bruker, Rheinstetten, Germany). HRESIMS data were performed on a Waters ACQUITY UPLC I-Class Plus-Xevo G2-XS QToF (Manchester, UK). Semipreparative HPLC isolation was conducted with an Agilent 1200 HPLC system using an ODS column (YMC-Triart C18, 10 mm × 250 mm, YMC Co., Ltd., Tokyo, Japan) with a flow rate of 2.0 mL/min. Silica gel (300–400 mesh), used in column chromatography (CC), and Silica gel GF 254 (10–40 µm), used in thin layer chromatography (TLC), were purchased from Qingdao Marine Chemical Factory, Qingdao, China.
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9

Purification and Characterization of Natural Compounds

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Optical rotations were performed on a JASCO P-1020 digital polarimeter. UV spectra were obtained on a Shimadzu UV-2401PC spectrometer. NMR spectra were recorded on a Bruker Avance III 600 MHz spectrometer, with TMS as an internal standard. ESIMS and HRESIMS were measured on an API QSTAR Pulsar 1 spectrometer. C-18 silica gel (40–60 μm; Daiso Co., Japan), MCI gel CHP 20P (75–150 μm, Mitsubishi Chemical Industries, Tokyo, Japan), Sephadex LH-20 (Amersham Pharmacia, Uppsala, Sweden), and silica gel (200-300 mesh; Qingdao Marine Chemical Inc., PR China) were used for column chromatography. silica gel GF254 (Qingdao Marine Chemical Inc., People’s Republic of China) was used for preparative TLC. Semi-preparative HPLC was carried out using an Agilent 1200 liquid chromatograph with a YMC-Pack ODS-A column (250 mm × 10 mm, i.d., 5 μm).
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10

Analytical Characterization of Natural Compounds

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Optical rotations were measured with a PerkinElmer 241 polarimeter. UV spectra were collected in a Shimadzu UV 2201 spectrophotometer. ECD spectra were recorded on a Bio-Logic Science MOS-450 spectrometer. IR spectra were obtained on a Bruker IFS 55 spectrometer. NMR experiments were performed on Bruker AV-400 and AV-600 spectrometers. Chemical shifts are reported as δ (ppm) related to the solvent pyridine-d5 (δH 7.58 and δC 135.91) as references, and coupling constants (J values) are given in Hz. HRESIMS data were obtained on an Agilent 6210 TOF mass spectrometer. Silica gel GF254, obtained from Qingdao Marine Chemical Factory, was used for TLC. Sephadex LH-20 for gel-permeation chromatography was obtained from Pharmacia. Column chromatography (CC) was performed on silica gel (200–300 mesh, Qingdao Marine Chemical Factory) and octadecyl silica gel (Merck Chemical Company Ltd., Darmstadt, Germany). RP-HPLC separations were conducted using an LC-6AD liquid chromatograph, SPD-20A UV detector (Shimadzu, Kyoto, Japan), equipped with a YMC Pack ODS-A column (250 × 20 mm, 120 Å, 5 μm).
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