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Fluorescence microscopy

Manufactured by Zeiss
Sourced in Germany, United States, Japan, China

Fluorescence microscopy is an imaging technique that uses fluorescent molecules to visualize and study the structure and function of cells, tissues, and other biological samples. The core function of this technology is to capture and analyze the light emitted by fluorescent labels, which are excited by a specific wavelength of light, to produce high-contrast images that reveal detailed information about the sample.

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370 protocols using fluorescence microscopy

1

Evaluating DNA Condensation and Membrane Morphology

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For evaluating DNA condensation, DU-145 and LNCaP cells were seeded in 6-well culture plates at a density of 105 cells/well and treated with free eupatorin and eupatorin-loaded Fe3O4@mPEG-b-PLGA nanoparticles. After 24 h, both floating and attached cells were harvested and washed with PBS twice. The samples were fixed with cold methanol and kept at 4 °C overnight. The cells were added to the Hoechst solution 33342 with a concentration of 10 ng/mL and incubated for 10 min in the dark. They were then washed three times with PBS; DNA condensation and nuclear fragmentation were shown under the fluorescence microscopy (Zeiss, Germany). Dil is a fluorescent membrane dye for studying plasma membrane morphology. After drug treatment, the cells were washed twice with PBS and exposed to Dil (20 μM) for 30 min in an incubator and then washed three times with PBS again. Plasma membrane morphologies were evaluated by fluorescence microscopy (Zeiss, Germany).
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2

Immunolabeling of Retinal Cell Types

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The suspended W-RBCs were seeded onto PDL-coated Fisher coverslips (Thermo Fisher Scientific, Inc.) for 1 h at 37°C. W-RBCs, hRPCs, RNLCs and RGLCs were then subjected to immunolabeling, as previously reported (20 (link)). The images were captured with a confocal laser scanning microscope (LSM 510) or fluorescence microscopy (Carl Zeiss AG, Oberkochen, Germany). The primary antibodies are detailed in Table II.
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3

Monocyte Adhesion to Vein Segments

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Following a 3-h incubation with 50 µmol/L NF-κB inhibitor, BAY11-7085, and exposure to acute arterial WSS for 6 h, LSV segments were dissected longitudinally, pinned with the luminal surface facing upwards and co-cultured, in static conditions, with 1 × 106 Calcein AM-labelled (10 µmol/L) THP-1 cells for 15 min. Immediately after co-culture and washing, in situ adhered monocytes and LSV segments were imaged using fluorescence microscopy (Zeiss, Germany).
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4

Exosome isolation and characterization

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Exosomes were isolated from the culture medium of FHC, HCT116 and DLD1 cells by using an ExoQuick TC kit (SBI, USA), and exosomes from the plasma of subjects were purified by using an ExoQuick Plasma Prep with Thrombin kit (SBI, USA). The size distribution of the exosomes was characterized by nanoflow cytometry using a U30 Flow NanoAnalyzer (NanoFCM, Inc., China) with technical assistance provided by KeyGEN Biotech Co. Ltd. (Jiangsu Province, China). The shape and size of the exosomes were observed by transmission electron microscopy (TEM) (Tecnai G2, FEI, USA). Moreover, the characterization of the exosomes was confirmed by the presence of exosomal protein markers TSG101 (# ab125011, Abcam, USA) and Alix (# 92880, CST, USA). The green fluorescent dye PKH67 (Umibio, China) was utilized to label exosomes isolated from the culture medium of cells. After dye was incubated with recipient cells for 3 h, fluorescence microscopy (Zeiss, Germany) was performed to visualize PKH67-labelled exosomes in recipient cells. The detailed procedures were described in our previous study [27 (link)].
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5

WISP-1 Treatment of SCC4 Cells

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SCC4 cells were prepared on 12-mm coverslips in 24-well plates, then treated with WISP-1, using previously established procedures [32 (link)]. Levels of fluorescence expression were detected using fluorescence microscopy (Zeiss; Oberkochen, Germany).
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6

Nuclear Morphology Changes and Apoptosis Detection

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The changes of nuclear morphology for assessing apoptosis were assessed using DAPI staining. Briefly, cells were cultured with or without different concentrations of isorhamnetin for 48 h, and were then fixed with 4% paraformaldehyde (Sigma-Aldrich Chemical Co.) for 10 min at RT. The cells were rinsed with PBS, and incubated with 1 μg/mL DAPI solution (Sigma-Aldrich Chemical Co.) at 37 °C for 10 min. Stained cells were visualized and photographed using fluorescence microscopy (Carl Zeiss, Oberkochen, Germany). For DNA fragmentation assay, the collected cells were lysed in a buffer containing 10 mM Tris-HCl (pH 7.4), 150 mM NaCl, 5 mM ethylenediaminetetraacetic acid, and 0.5% Triton X-100 for 30 min. The fragmented DNA in the supernatant was extracted using an equal volume of neutral phenol:chloroform:isoamyl alcohol (25:24:1, Sigma-Aldrich Chemical Co.), analyzed electrophoretically on 1% agarose gel containing EtBr (Sigma-Aldrich Chemical Co.), and photographed under a Fusion FX Image system (Vilber Lourmat, Torcy, France).
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7

Mitochondrial Membrane Potential Analysis

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Analysis of mitochondrial membrane potential using JC-1 dye was performed essentially as described (Kim et al., 2007 (link); Macchi et al., 2013 (link)) with slight modifications. Briefly, muscles, fat bodies and midguts of 25 day old male flies were dissected in Grace’s insect medium (Sigma, USA). Dissected tissues were incubated in 5 mM JC-1 (BioVision, San Francisco, CA) solution for 1 hour at room temperature followed by mounting in Grace’s medium and imaging using fluorescence microscopy (Zeiss, Germany) and AxioVisionLE4_3 software. Green (λem = 527 nm) and red (λem = 590 nm) fluorescence filters were used for microscopy.
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8

MCF-7 Cell Adhesion Assay on Matrigel

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The adhesion assay of MCF-7 cells to the matirgel was assessed according to the method described previously by this lab with minor modifications [18 (link), 54 (link)]. Matrigel protein were diluted to appropriate concentration and pretreat 96-well culture plates with this matrigel for 12 h. Rhodamine 123-labeled MCF-7 cells were co-cultured with the matrigel protein in each well, followed by treatment with UA, Asp and Asp-UA for 1 hour. The non-adherent tumor cells were removed from the plate by washing with PBS, and the tumor cells bound to the matrigel were measured by fluorescence microscopy (Zeiss, Germany). The mean inhibition of adhesion for ten visual fields was calculated by using the equation: percent of control adhesion = [the number of adhered cells in treated samples/the number of adhered cells in the control group] × 100%.
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9

Kidney Immunofluorescence Imaging

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Sections of kidneys were incubated with goat anti-mouse IgG Cy3 (Jackson ImmunoResearch, West Grove, PA, USA, catalogue number 115-165-146) for 1 h in the dark and mounted with Prolong gold antifade reagent (Thermo Fisher Scientific). Immune complex deposits were observed by fluorescence microscopy (Zeiss).
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10

Measuring Mitochondrial Membrane Potential

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Mitochondrial membrane potential (Δψ) was determined using a MitoPT TMRM assay kit according to manufacturer’s instructions (ImmunoChemistry Technologies, Bloomington, MN). Briefly, serum-deprived VSMCs were exposed to PIO (30 μM) for 1 or 3 hr, or vehicle control. Subsequently, VSMCs were stained with tetramethylrhodamine methyl ester (TMRM, 200 nM, 20 min at 37°C in the dark), washed with 1 ml wash buffer, and then visualized by fluorescence microscopy (Zeiss, Thornwood, NY). In intact cells, the cationic nature of TMRM allows it to accumulate within the inner membrane region of polarized mitochondria, resulting in a marked increase in TMRM-associated orange fluorescence. When mitochondrial membrane depolarizes, TMRM gets dispersed throughout the cytosol at a concentration that yields minimal fluorescence upon excitation. Thus, mitochondrial membrane potential was assessed by examination of TMRM-associated orange fluorescence (Excitation/Emission: 548 nm/573 nm). Carbonylcyanide m-chlorophenylhydrazone (CCCP, 50 μM, 1 hr) a generic mitochondrial membrane depolarizer, was used as a positive control.
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