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10 protocols using anti mouse cd45 percp cy5

1

Isolation and Analysis of Immune Cells from Lung and Spleen

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Lung tissue was chopped and digested using collagenase D (Roche Diagnosis) in Dulbecco’s modified Eagle’s medium (Life Technologies, Carlsbad, CA) for 30 min at 37 °C with agitation. Next, the chopped lung or spleen tissue was passed through a 40-μm cell strainer to obtain single-cell suspensions before RBC lysis. Cells were incubated with LIVE/DEAD Aqua (Thermo Fisher Scientific). Cells were stained with the following monoclonal antibodies: anti-mouse CD45-PerCP-Cy5.5 (BioLegend, San Diego, CA, USA), CD4-PE-Cy7 (BioLegend), CD25-PE (eBioscience), and Foxp3-APC (eBioscience, Waltham, MA, USA). Flow cytometry analysis was performed using a BD FACSCanto II flow cytometer (BD Bioscience, San Jose, CA, USA), and the results were analyzed using FlowJo software (TreeStar, Ashland, OR, USA).
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2

Multicolor Flow Cytometry Immunophenotyping

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Cultured cells were stained in PBS supplemented with 2% fetal bovine serum (FBS) at 4 °C for 30 min with the following human antibodies: CD34 PE (Biolegend, clone 581, Santiago, CA, US), CD34 FITC (BD Biosciences, clone 581, Franklin Lake, NJ, US), CD38 PE-Cy7 (BD Biosciences, clone HIT2), CD90 APC (BD Biosciences, clone 5E10), CD45 PE (Biolegend, clone HI30), CD11b/Mac1 APC (BD Biosciences, clone ICRF44), CD3 FITC (BD Biosciences, clone HIT3a), CD19 BV201 (Biolegend, clone SJ25C1), anti-mouse CD45 PErCP-Cy5.5 (Biolegend, clone 30-F11) and 7-amino-actinomycin D (7-AAD) (Biolegend). 7-AAD was used to exclude dead cells. Stained cells were washed once with PBS supplemented with 2% FBS and analyzed using the BD LSRFortessa (BD Biosciences). Proportion of positive/negative cells with the same mean fluorescence intensity (MFI) was represented.
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3

Flow Cytometric Characterization of Stromal Vascular Fraction

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SVF isolated from scWAT was incubated with Fixable Viability Dye eFluor™ 780 (eBioscience, 65-0865-14) at RT for 15 min for live-dead staining and then centrifuged at 520 × g for 5 min. Pelleted cells were resuspended in FACS buffer containing anti-mouse CD16/CD32 Fc Block (Biolegend, 101302, 1:1000) for 5 min and then incubated with the following antibodies for 30 min at 4 °C in the dark: anti-mouse CD26 (DPP4)-allophycocyanin (APC) (Biolegend, 137807, 1:100), anti-mouse CD45-PerCP/Cy5.5 (Biolegend, 103131, 1:1000), anti-mouse CD31-PerCP/Cy5.5 (Biolegend, 102419, 1:300), F4/80-PE (Cell Signaling, 64763, 1:80), CD45-AF700 (BD Biosciences, 560510, 1:800), CD206-PE-Cy7 (Biolegend, 141720, 1:100), CD11c-AF647 (Biolegend, 117312, 1:100). After incubation, the cells were washed once with PBS and then resuspended in FACS buffer. The cells were sorted using a BD FACSAria III cytometer (BD Biosciences) or analyzed using a CytoFLEX S flow cytometer (Beckman Coulter). Flow cytometry plots were analyzed with the FlowJo (v10) or CytExpert (v2.3.0.84) software.
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4

Multiparameter Flow Cytometry of Hematopoietic Cells

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50 μL peripheral blood or ~5×105 bone marrow cells in PBS with 10% FBS were blocked with anti-mouse CD16/CD32 (cat # 101302, Biolegend, San Diego, CA, USA) and then stained with fluorophore conjugated antibodies. Following staining, red blood cells were lysed with RBC lysis buffer (cat # sc-296258, Santa Cruz Biotechnology, Dallas, TX, USA) for 10 min and washed twice with 10% FBS in PBS. Peripheral blood samples underwent a second 5 min RBC lysis prior to washing. Samples were acquired on a BD Accuri C6 or Beckman coulter Gallios flow cytometer and analyzed using BD Accuri Csampler software or FlowJo. Cells were stained with anti-human CD34 PE (cat # 343606, Biolegend), anti-human CD11b PE (cat # 555388, BD Biosciences, San Jose, CA, USA), anti-human CD3 PE/Dazzle™ 594 (cat # 300450, Biolegend), anti-mouse CD45 PerCP-Cy5.5 (cat # 103132 Biolegend), anti-mouse CD45 PerCP (cat # 557235, BD), anti-human CD19 PE-Cy7 (cat # 302216, Biolegend), anti-human CD45 APC (cat # 555485, BD Bioscience or cat # 304012, Biolegend). Analysis based 10 000 bone marrow and 3 000 blood cells from the live cell gate.
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5

Isolation and Characterization of Dendritic Cells

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DC isolation from tissue specimens was performed as described previously (35 (link)). Briefly, LN and thymus were digested with collagenase D (120μg/ml) and DNAse I (120μg/ml) (both from Roche, Austria) in RPMI 1640 medium (Sigma Aldrich). Whole trunk skin was cut into small pieces and digested with Liberase TM (150μg/ml, Roche, Austria) and DNAse I in RPMI 1640 medium. Skin specimens were incubated for 45 min and LN and thymus specimens for 30 min at 37°C with agitation. Cells were filtered through 70 μm nylon mesh filters and washed with PBS. Cells were stained with anti-mouse CD45-PerCP/Cy5.5 (clone: 30-F11, BioLegend), anti-mouse CD11c-BV421 (clone: N418 BioLegend), anti-mouse EpCam-PeCy7 (clone G8.8, BioLegend), anti-huLangerin-A647 (clone: 808E10.01, Dendritics), live/dead-BV500 (eBioscience). Cells were washed and resuspended in PBS/10mM EDTA to prevent cell aggregation. Fluorescent stains and YFP expression in LCs was analyzed by flow cytometry on a FACS Canto II (Becton Dickenson).
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6

Multiparameter Flow Cytometry for Immune Cell Profiling

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Single cell suspensions of BM, liver, lung, spleen, and peripheral blood from engrafted mice were blocked with rat and mouse serum then labeled with Live Dead® Aqua (Life Technologies), anti-mouse CD45 PerCP Cy5.5, anti-human CD45 APC Cy7, HLA DR PE Cy7, CD19/20 Pacific blue and either CD141 APC, CD123 PE (all from BioLegend), and CD1c FITC (Abcam) to identify DC, or CD3 Pacific blue, CD8 PE Cy7, CD14 APC (all from BioLegend), and CD4 FITC (BD Biosciences) for other leukocytes (Figure S1 in Supplementary Material). Absolute cell counts were determined by the addition of 5,000 Trucount beads (BD Biosciences) per tube. Data were acquired on a Cyan flow cytometer (Beckman Coulter) and analyzed using Flow Jo software (Tree star, version 8).
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7

Multiparameter Flow Cytometry of Hematopoietic Cells

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50 μL peripheral blood or ~5×105 bone marrow cells in PBS with 10% FBS were blocked with anti-mouse CD16/CD32 (cat # 101302, Biolegend, San Diego, CA, USA) and then stained with fluorophore conjugated antibodies. Following staining, red blood cells were lysed with RBC lysis buffer (cat # sc-296258, Santa Cruz Biotechnology, Dallas, TX, USA) for 10 min and washed twice with 10% FBS in PBS. Peripheral blood samples underwent a second 5 min RBC lysis prior to washing. Samples were acquired on a BD Accuri C6 or Beckman coulter Gallios flow cytometer and analyzed using BD Accuri Csampler software or FlowJo. Cells were stained with anti-human CD34 PE (cat # 343606, Biolegend), anti-human CD11b PE (cat # 555388, BD Biosciences, San Jose, CA, USA), anti-human CD3 PE/Dazzle™ 594 (cat # 300450, Biolegend), anti-mouse CD45 PerCP-Cy5.5 (cat # 103132 Biolegend), anti-mouse CD45 PerCP (cat # 557235, BD), anti-human CD19 PE-Cy7 (cat # 302216, Biolegend), anti-human CD45 APC (cat # 555485, BD Bioscience or cat # 304012, Biolegend). Analysis based 10 000 bone marrow and 3 000 blood cells from the live cell gate.
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8

Characterizing Immune Cell Populations in Murine HNSCC

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Primary murine HNSCC tissues and cervical lymph nodes were harvested from 4NQO-induced mice treated with vehicles or anti-CD276 antibodies for 10 days. Single cell suspensions were achieved as described above. For staining of cell surface markers, cells were incubated with indicated antibodies on ice for 30min and washed with staining buffer. Then, the stained cells were examined using a flow cytometer (Navios, Beckman Coulter) and the data was analyzed with CytExpert software (https://www.beckman.com/flow-cytometry/instruments/cytoflex/software). Antibodies used for flow cytometry analysis are listed below: anti-mouse FVS700 APC-700 (BD Biosciences, Cat#564997), anti-mouse CD45 Percp-cy5.5 (BioLegend, Cat#103132), anti-mouse CD4 PE-cy7 (BioLegend, Cat#100422), anti-mouse CD3 Alexa Flour488 (BioLegend, Cat#100210), anti-mouse CD8 BV786 (BD Biosciences, Cat#563332), anti-mouse NK1.1 BV510 (BioLegend, Cat#108738), anti-mouse Gr-1 PE/Dazzle 594 (BioLegend, Cat#108452), anti-mouse CD11b BV605 (BioLegend, Cat#101257), and anti-mouse F4/80 BV650 (BioLegend, Cat#123149).
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9

Lung Immune Cell Isolation and Profiling

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To collect white blood cells from the lung, the lung tissue was isolated and minced into small pieces, mechanically disintegrated, filtered through 70 µm cell strainer, and then RBCs were lysed. To determine alveolar cell, interstitial macrophage, and monocyte populations, the collected cells were stained with fluorescent conjugated antibodies including anti-mouse CD45-PerCP-Cy5.5, CD11c-APC, and F4/80-PE antibodies (Biolegend, CA, USA) for 30 minutes and analyzed by flow cytometry. To evaluate the regulatory T cell population, the cells were stained with anti-mouse CD4-PerCP-Cy5.5 antibody (Biolegend, CA, USA), further fixed, permeabilized and stained with anti-mouse Foxp3-PE antibody (Biolegend, CA, USA) and then analyzed by flow cytometry.
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10

Characterizing Monocyte and Platelet Responses

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Leukocytes: Blood was collected via the tail vein with EDTA-coated capillaries. Red blood cells were lysed with RBL buffer (Sigma Aldrich), and blocking achieved with antimouse CD16/CD32 (eBioscience). Monocytes were identified by staining with anti-mouse CD45-PerCp/Cy5.5 (Biolegend), anti-mouse CD115 (CSF-1R)-Brilliant Violet 605 (Biolegend) and antimouse Ly-6G/Ly-6C-APC (Biolegend). Monocyte activation was determined via by CD11b expression (geo-mean fluorescence intensity [MFI]). Neutrophils were identified as CD45hiCD115loLy6-C/Ghi. Monocyte-platelet aggregates were identified by first gating on monocyte population of interest and identifying those positive for platelets with CD41. Flow cytometry was performed using a LSRII analyzer. Whole blood counts were recorded on a CBC (Oxford Sciences). Platelets: Blood was collected via retro orbital bleeding with EDTA-coated capillaries, and diluted in heparin. Antibodies against P-selectin-AlexaFluor 647 (BD Biosciences) or JON/A-PE (Emfret) were added to whole blood, and platelet agonists added in accordance with the figure legend. Samples were incubated for 15 min, prior to dilution in Tyrode’s buffer, and immediately analyzed via flow cytometry (BD Accuri). Platelets were identified by forward scatter and side scatter characteristics.
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