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24 protocols using cd25 pc61

1

Comprehensive Immune Cell Analysis

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Spleens were collected and single cell suspensions made. For T helper cell analysis, cells were surfaced stained with anti-CD4 (RM 4-5; eBioscience), permiabalized and intracellular stained with IFN-γ (XMG1.2; eBioscience), IL-4 (BVD6-24G2; eBioscience), RORγ (B2D; eBioscience), CD25 (PC61.5; eBioscience) or FoxP3 (FJK-16s; eBioscience). Representative gating in Supplemental Data Figure S1. For CD8+ T cells, cell surfaces were stained with anti- CD8a (53-6.7; eBioscience) and anti- CD3e (145-2C11; eBioscience). For B cells, cell surfaces were stained with anti- CD21/CD35 (8D9; eBioscience) and anti- CD19 (1D3; eBioscience). T cell activation markers CD25 (eBio3C7; eBioscience) and CD69 (H1.2F3, Biolegend) were measured using flow cytometry.
For CBC exams ≈ 50 μL of blood was collected into EDTA coated tubes via retro-orbital bleed. VetScan HM5 Analyzer was used.
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2

In vivo T cell Immunophenotyping

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In vivo labeling of T cells with fluorescent antibodies was performed as previously described (Turner et al., 2014). Briefly, mice were administered, PE- or Alexa 647-conjugated anti-CD90.2 (anti-Thy1.2; clone 53-2.1, BioLegend), or PE-conjugated anti-CD45.2 antibody (clone 104, Biolegend), intravenously, and 7–10 minutes later lungs were perfused, dissected and digested in RPMI1640 medium with collagenase D, DNAse and Trypsin inhibitor for 1 hour at 37°C. Mediastinal lymph nodes and spleen were dissected and manually disrupted to generate single cell suspensions. Cell suspensions were stained with fluorescent-conjugated antibodies for CD4 (clones RM4-5, BD Biosciences, and GK1.5, eBioscience), CD8 (clone 53-6.7, BioLegend), CD11a (clone M17/4, BioLegend),CD11b (M1/70 eBioscience), CD11c (N418, eBioscience), CD25 (PC61.5, eBioscience), CD45 (30-F11, BioLegend), CD69 (clone H1.2F3, eBioscience), CD86 (GL-1, Biolegend), CD103 (clone 2E7, eBioscience) and Anti-Mouse MHC Class II (I-A/I-E) (clone M5/114.15.2, eBioscience) was performed according to manufacturers’ protocol. Stained cells were analyzed using the BD LSRII flow cytometer and flow-jo software (Treestar, Ashland, OR). Absolute cell numbers were determined by flow cytometry using CountBright Absolute Counting Beads (Invitrogen) according to manufacturer’s protocol.
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3

Characterization of T Cell Subsets

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Mouse specific antibodies against CD3ε/γ (17A2; Biolegend), CD4 (RM4-5; eBioscience), CD25 (PC61.5; eBioscience), CD44 (IM7; BD Biosciences), CD62L (MEL-14; Life Technologies), CD126 (D7715A7; eBioscience), CD127 (25-1271-82; eBioscience),βTCR (H57-597), gp130 (125623; R&D Systems), IFNγ (XMG1.2; eBioscience), IL-4 (11B11; eBioscience), IL-17A (TC11-18H10.1; Biolegend), IL-21 (Recombinant mouse IL-21R Fc Chimera protein; R&D and IL-21 receptor antibody; Jackson Immuno Research) and PTPN2 (AF1930; R&D) were used. For detection of human antigens, we used antibodies specific to CD3 (UCHT1; BioLegend), CD4 (RPA-T4; eBioscience), CD45RA (HI100; BioLegend), CD45RO (UCHL1; BioLegend), CD62L (DREG-56; BD Biosciences), CD197 (CCR7; G043H7; BioLegend). Human and mouse cross-specific antibodies to pY STAT1 (pY701; 4a), pY-STAT3 (pY705; 4/P-STAT3), pS-STAT1 (pS727; K51-856) and pS STAT3 (pS727, 49/p-Stat3) were from BD Biosciences.
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4

Multiparametric Flow Cytometry Analysis of Immune Cells

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Human single cell suspensions were surface stained with fluorescence conjugated mAb to CD134 (L106, BD Bioscience), CD137 (4B4-1, BD Bioscience), CD69 (FN50, eBioscience), CD56 (N901, Beckman Coulter), CD3 (SK7, eBioscience) and CD5 (OKT1, in house). Murine cells were first FcγR-blocked (2.4G2, in-house) and then stained with CD49b (DX5, eBioscience), NKp46 (29A1.4, eBioscience), CD3 (17A2, eBioscience), CD4 (RM4–5, eBioscience), CD8 (53–6.7, eBioscience) or CD25 (PC61.5, eBioscience). For intracellular FOXP3 (NRRF-30, eBioscience) staining, cells were fixed and permeabilised as per manufacturer’s protocol (eBioscience). Acquisition was performed using FACSCalibur (BD Biosciences) and analysed using Cytobank (Cytobank).
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5

Immune Cell Characterization in Lymph Nodes

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Single cells suspensions were prepared from mesenteric lymph nodes (MLN) by forcing the organs through an 80µm mesh (Sigma-Aldrich). Cells were washed twice with PBS and then suspended in Flow Cytometry Staining Buffer (eBioscience). To block unspecific binding of antibodies, cell suspensions were incubated with an anti‐CD16/32 mAb (2.4G2, eBioscience) for 15 min on ice and then stained with combinations of the following fluorochrome-labeled antibodies against surface markers for 30 min on ice: CD3 (17A2, eBioscience), CD4 (GK1.5, eBioscience), CD69 (H1.2F3, Abcam), and CD25 (PC61.5, eBioscience). Intracellular staining for FoxP3 (FJK-16s, eBioscience) was performed using the FoxP3/Transcription factor staining buffer set (eBioscience) according to the manufacturer’s instructions. Flow cytometric analysis was performed using a FACSCalibur based on CellQuest software (BD-Becton Dickinson, Franklin Lakes, USA). T cell effectors (Teff) were defined by: CD3, CD4, CD69+. T cell regulators (Treg) were defined by: CD3, CD4, CD25, FoxP3+.
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6

Multicolor Flow Cytometry Analysis

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Cells were washed twice and treated with CD16/32 (eBiosciences) for 15 min at 4°C before being surface stained for CD4 GK1.5 (PerCP or FITC), CD8 53-6.7 (FITC or APC), and CD25 PC61.5 (APC) (eBiosciences). Cells were prepared for intracellular staining using eBiosciences FoxP3 staining kit. Following fixation and permeabilization, the cells were treated with 2% rat serum to prevent non-specific binding. Cells were stained for FOXP3 FJK-16s (PE), IFN-γ XMG1.2 (PE), and Ki67 SolA15 (PE) (eBiosciences) for 30 min and acquired using an Accuri C6 flow cytometer (BD Biosciences).
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7

Phenotypic Profiling of Immune Cells

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Phenotypic analyses of cell surface markers in spleen, lymph node and thymus were performed on unchallenged mice at 6-8 weeks of age. Spleens were processed into cell suspensions through a 70μm strainer by a syringe plunger in RPMI with 10% FBS and then treated with ACK lysis buffer to remove red blood cells. Lymph nodes were processed using glass sides and the thymi were minced. The resulting cell suspensions were centrifuged and stained with antibodies specific for CD4 (RM4-5), CD8α (53-6.7), CD62L (MEL-14), CD44 (IM7), all BD Pharmingen (San Jose, CA), CD25 (PC61.5, ebioscience, San Diego CA), and a viability stain (Life Technologies, Carlsbad, CA). After staining for 25 minutes at 4°C cells were fixed in PBS containing 2% paraformaldehyde. All flow cytometry data was acquired on an LSRII cytometer (BD Biosciences, San Jose, CA) and analyzed using FlowJo software (Treestar, Ashland, Oregon).
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8

Endothelial Cell and Endothelial Microparticle Sorting

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Endothelial cells (ECs) were sorted as Ter119CD41CD144+. EMP were sorted as Sca1Ter119CD16/32+cKit+CD41+. The following antibodies were used for these studies with various fluorescent color combinations: CD144 (11D4.1, BD Biosciences; 1:200), CD41 (MWReg30, eBioscience; 1:200), CD16/32 (clone 93, eBioscience; 1:200), Ter119 (TER-119 BD Biosciences; 1:200), CD8a (53-6.7, eBioscience; 1:200), CD4 (GK1.5, eBioscience; 1:200), CD45 (30 F-11, BD Biosciences; 1:200), CD25 (PC61.5, eBioscience; 1:200), CD44 (IM7, eBioscience; 1:200), CD117 (2B8, eBioscience; 1:200), Sca1 (D7, eBioscience; 1:200), CD11b (M1/70, eBioscience; 1:200), CD19 (1D3, eBioscience; 1:200), B220 (RA3-6B2, eBioscience; 1:200), CD93 (AA4.1, eBioscience; 1:200). Cells were sorted on FACSAria II (BD Biosciences).
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9

Characterization of T Cell Subsets

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Mouse specific antibodies against CD3ε/γ (17A2; Biolegend), CD4 (RM4-5; eBioscience), CD25 (PC61.5; eBioscience), CD44 (IM7; BD Biosciences), CD62L (MEL-14; Life Technologies), CD126 (D7715A7; eBioscience), CD127 (25-1271-82; eBioscience),βTCR (H57-597), gp130 (125623; R&D Systems), IFNγ (XMG1.2; eBioscience), IL-4 (11B11; eBioscience), IL-17A (TC11-18H10.1; Biolegend), IL-21 (Recombinant mouse IL-21R Fc Chimera protein; R&D and IL-21 receptor antibody; Jackson Immuno Research) and PTPN2 (AF1930; R&D) were used. For detection of human antigens, we used antibodies specific to CD3 (UCHT1; BioLegend), CD4 (RPA-T4; eBioscience), CD45RA (HI100; BioLegend), CD45RO (UCHL1; BioLegend), CD62L (DREG-56; BD Biosciences), CD197 (CCR7; G043H7; BioLegend). Human and mouse cross-specific antibodies to pY STAT1 (pY701; 4a), pY-STAT3 (pY705; 4/P-STAT3), pS-STAT1 (pS727; K51-856) and pS STAT3 (pS727, 49/p-Stat3) were from BD Biosciences.
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10

Immune Cell Characterization Protocol

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DNFB, brefeldin A, and PF3644022 were from Sigma-Aldrich; SC409, PD98059, SP600125, and rapamycin from EMD Millipore; CFSE from Life Technologies; IFN-γ, IL-2, IL-4, IL-6, and TGF-β from Peprotech. Fluorescent-conjugated antibodies against the following markers were used in flow cytometry: CD3 (145–2C11), CD4 (GK1.5 and RM4–5), CD8 (53–6.7), CD25 (PC61.5), Foxp3 (anti-mouse/rat staining kit), IFN-γ (XMG1.2), IL-4 (BVD6–24G2), IL-17A (eBio17B7; all from eBioscience). Antibodies against the following proteins were used in cell stimulation, Fc receptor blocking, and cytokine neutralization: CD3 (145–2C11), CD28 (37.51), IFN-γ (XMG1.2), IL-12 (C17.8), IL-4 (11B11), CD16/CD32 (2.4G2; all from BD Pharmingen); and hamster IgG (MP Biomedicals). Antibodies against the following proteins were used in immunoblotting: ERK (9102), phosphorylated (p-) p38 (9211), p-JNK (9251), p-ERK (9101), p-S6K1 (9205), p-S6 (4858), p-MK2 (3007), p-TSC2 (3616; all from Cell Signaling Technology); p38α (sc-535; Santa Cruz Biotechnology); p38β (33–8700; Life Technologies); p38γ and p38δ (University of Dundee); JNK (554285, BD Pharmingen); Foxp3 (14–5773, eBioscience); and actin (A4700; Sigma-Aldrich).
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