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5 protocols using pregm bullet kit

1

Culturing Human Prostate Cell Lines

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Two human PCa cell lines, LNCaP and PC3, were purchased from the American Type Culture Collection (Manassas, VA, USA) and cultured in RPMI 1640 medium (HyClone, Los Angeles, CA, USA) supplemented with 10% fetal bovine serum (GIBCO/Invitrogen, Carlsbad, CA, USA), 2 mM l-glutamine, and antibiotics. A normal human prostate epithelial cell line (PREC) was purchased from Lonza Company and cultured in PrEGM Bullet kit (Lonza, Allendale, NJ, USA) with antibiotics. All cell lines were maintained at 37 °C in a humidified chamber supplemented with 5% CO2.
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2

Characterization and Maintenance of Prostate Cell Lines

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Normal human prostate epithelial cells (PrEC) were purchased from Lonza Company in 2012 and were cultured in PrEGM Bullet kit (Lonza, USA) with antibiotics. Human PCa cell lines, PC-3, LNCaP and DU145 were purchased from the American Type 6 Culture Collection (Manassas, VA, USA) in 2012 and were cultured in RPMI 1640 medium (Hyclone, USA) supplemented with 10% fetal bovine serum (Gibico, USA), 2 mM L-glutamine, and antibiotics. The companies performed cell lines characterizations and passaged in the laboratory for about 3 months after resuscitation. Therefore, we did not carry out the reauthentication of the cell lines. They used Short Tandem Repeat (STR) profiling to detect the misidentified, cross-contaminated, or genetically drifted cells. Promega’s PowerPlex® 18D System was used to amplify 17 STR loci plus Amelogenin. All cell lines were maintained at 37 □ in a humidified chamber supplemented with 5% CO2.
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Culture and Maintenance of Prostate Cell Lines

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The human prostate epithelial cell line, PrEC, was purchased from Lonza (Walkersville, MD, United States). PrEC cells (passages 5–11) were cultured in PrEGM BulletKit medium (Lonza) supplemented with 10% fetal bovine serum (FBS; GIBCO/Invitrogen, Grand Island, NY, United States) and 100 U/ml penicillin plus 100 μg/ml streptomycin (GIBCO/Invitrogen) at 37°C. The human prostate cancer cell lines, LNCaP and DU145 (originally from the American Type Culture Collection, Manassas, VA, United States), were provided by Dr Hirotsugu Uemura (Kindai University, Osaka, Japan) (Muramatsu et al., 2019 (link)). The human prostate cancer cell line, PC-3, was obtained from the Cell Resource Center for Biomedical Research, the Institute of Development, Aging and Cancer, Tohoku University (Sendai, Japan). LNCaP, PC-3, and DU145 cells (passages 5–11) were cultured in RPMI-1640 medium (Sigma-Aldrich, St. Louis, MO, United States) supplemented with 10% FBS and 100 U/ml penicillin plus 100 μg/ml streptomycin at 37°C. Experiments using VEGF-C stimulation were performed after the exposure to RPMI-1640 medium containing 1% FBS for 4 h to prevent enhanced phosphorylation and starvation stress.
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4

Cell Line Characterization for ChIP Assay

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The human kidney HEK293T (ATCC# CRL-3216), colon HCT116 (ATCC# CCL-247), and breast cancer MCF-7 (ATCC# HTB-22) cells were obtained from ATCC (https://www.atcc.org/). The human prostate cancer C4-2B cells were obtained from ViroMed Laboratories. The human normal prostate epithelial cells (PrEC) were obtained from Lonza (Cat# CC-2555). The corresponding medium of each cell line (DMEM for HEK293T, McCoy's 5A for HCT116, RPMI 1640 for C4-2B, DMEM for MCF-7) was supplemented 10% fetal bovine serum (Gibco by Thermo Fisher Scientific) and 1% penicillin and streptomycin at 37°C with 5% CO2. PrEC cells were grown with PrEGM Bullet Kit (Prostate Epithelial Cell Growth Medium with supplements), which were obtained from Lonza (Cat# CC-3166). All cell stocks except primary cells (PrEC) were authenticated at the USC Norris Cancer Center cell culture facility by comparison to the ATCC and/or published genomic criteria for that specific cell line; all cells are documented to be free of mycoplasma. Preauthentication was performed at Lonza for PrEC, and the first passage from the cultured cells was used for the ChIP assay.
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5

Prostate Cell Line Cultivation and RNA Extraction

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For experimental validation we used the prostate cancer cell line VCaP and the normal prostate cell line RWPE-1, which were obtained from the American Type Culture Collection (ATCC). VCaP was cultured in Dulbecco’s modified Eagle's medium (Life Technologies, Darmstadt, Germany) supplemented with 2 mM L-glutamine, 1 mM sodium pyruvate, 10% fetal calf serum (FCS, Biochrom, Berlin, Germany), and RWPE-1 in Keratinocyte serum-free medium supplemented with 5 ng/mL EGF and 50 μg/mL bovine pituitary extract (Life Technologies). An additional prostate cancer cell line, LNCaP, was provided by Prof. Klaus Jung (Department of Urology, Charité University Hospital, Berlin, Germany) and cultured in RPMI1640 (Life Technologies) supplemented with 10% FCS. PrEC (Lonza, Basel, Switzerland) was cultured in PrEGM bullet kit (Lonza), according to the supplier’s protocol. For each cell line 700,000 cells were centrifuged and frozen in RNAlater (Life Technologies, Darmstadt, Germany). RNA was extracted using the SPLIT RNA extraction kit (Lexogen GmbH, Vienna, Austria). Analysis of the large RNA fractions (> 150 nt) indicated very high RNA quality (RIN > 9.8 on an Agilent Technologies Bioanalyzer).
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