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2 protocols using cytofix cytoperm and perm wash

1

Isolation and Analysis of Immune Cells

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Bleomycin was purchased from Millipore (Billerica, MA). Biotin conjugated rat anti-mouse CD16/32 and CD45 antibodies, PE- and Cy7-conjugated anti-mouse CD45 antibody, FITC-conjugated anti-mouse CD11b antibody and Cytofix/Cytoperm and Perm wash were from BD Biosciences (San Jose, CA). Anti-mouse CD45 magnetic beads and MACS Cell Separation columns were purchased from Miltenyl Biotec (San Diego, CA). Collagen I antibody was purchased from Rockland (Gilbertsville, PA). HRP-conjugated secondary antibodies are from Santa Cruz (Santa Cruz, CA). Collagenase A was purchased from Roche (Indianapolis, IN). Alexa Fluorconjugated secondary antibodies and fluorescein-conjugated type I collagen are from Life Technologies (Grand Island, NY). Rabbit IgG isotype control antibody was purchased from Southern Biotech (Birmingham, AL). Collagen III antibody was from Abcam (Cambridge, MA). LAMP1 antibody was from the University of Iowa Developmental Studies Hybridoma Bank. Adenoviruses expressing Cre was from the University of Iowa Gene Transfer Vector Core Facility. All other reagents were purchased from Sigma-Aldrich (St Louis, MO).
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2

Multiparametric Flow Cytometry Assay

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Cell suspensions were incubated with fluorochrome labeled-Abs for 30 min at 4°C. Different combinations of the following anti-mouse Abs (BD Biosciences, eBioscience, Biolegend) were used: PerCP-Cy5.5-conjugated anti-CD4, FITC-conjugated anti-CD8 and anti-CD3, PE-conjugated anti-CD25, APCconjugated anti-gd-TCR and anti-CD19, PE-Cy7-conjugated anti-NK1.1, APC-Cy7-conjugated anti-B220, PE-conjugated anti-PD-1, anti-PD-L1 and anti-PD-L2. Transcription factors Forhead box P3 (FoxP3) and interferon-regulatory factor-4 (IRF-4) were detected after cell fixation and permeabilization with FoxP3 Staining Buffer Set (eBioscience) using the following antibodies: APC-conjugated anti-FoxP3 and eFluor660conjugated anti-IRF4 (eBioscience). For intracellular cytokine staining, DCs or allogenic cultures were exposed to brefeldin A (10 μg/ml; Sigma) for the last 4 h of cell culture. Cells were fixed and permeabilized with Cytofix/Cytoperm and Perm/Wash (BD Biosciences) and incubated with surface staining antibodies and PE-conjugated anti-IL-17 and APC-conjugated anti-IFN-g (Biolegend). Cells were acquired on BD FACSCanto II and analyzed using the FlowJo software.
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