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SILAC Labeling for Proteomics Analysis

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SILAC labelling was performed as previously described [15] (link), [16] (link), briefly: NHF were cultured and passaged in SILAC-DMEM with 4.5 g/L glucose, sodium pyruvate and 3.7 g/L NaHCO3 (PAN Biotech), supplemented with 10% dialyzed FBS (Gibco), 1% penicillin/streptomycin, 82 mg/L l-proline, 84 mg/L l-arginine HCl (Arg0) and 146 mg/L l-lysine HCl (Lys0) for light labelling (Sigma-Aldrich). For medium-heavy labelled cells, Arg0 and Lys0 were replaced by l-arginine-13C614N4 and l-lysine-2H4 (Arg6, Lys4). For heavy labelling, l-arginine-13C615N4 and l-lysine-13C615N2 (Arg10, Lys8) were used.
SCC13 cells were cultured in SILAC-Keratinocyte Growth Medium 2 (KGM2) without calcium, l-arginine, and l-lysine (PromoCell), supplemented with SupplementMix containing 0.004 mL/mL bovine pituitary extract, 0.125 ng/mL epidermal growth factor, 5 μg/mL insulin, 0.33 μg/mL hydrocortisone, 0.39 μg/mL epinephrine, 10 μg/mL transferrin and 0.06 μM CaCl2 (PromoCell), with 1% penicillin/streptomycin. l-Lysine HCl concentrations were the same as mentioned above. For l-arginine HCl, 210 mg/L were used [17] (link).
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Cultivation of Human Nasal Epithelial Cells

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Human nasal epithelial cells (HNEpC; PromoCell) were cultured in Airway Epithelial Cell Growth Medium (basal medium supplemented with BPE, EGF, insulin, hydrocortisone, epinephrine, triiodo-L-thyronine, transferrin and retinoic acid; PromoCell) at 37 °C in a 5% CO2 atmosphere. HNEpC cells at passage 5 were used in the experiments. The cells were plated in 48-well plates (BD Falcon) coated with type I collagen (Corning) at the initial density of 1 × 104 cells/cm2, 24 h prior to the experiments. The growth medium was then changed to the experimental cell culture medium containing nanoparticles or vehicle control (water). The experimental medium consisted of phenol red-free DMEM, prepared from powder using water or a mixture of water and 214 mg L−1 TA-AgNP suspension in water and supplemented with 1 gL−1 glucose, NaHCO3 (Gibco), sodium pyruvate (Lonza), 1% bovine serum albumin (BSA), L-glutamine and P/S (50 units/mL of penicillin and 50 µg/mL of streptomycin). Water (used as vehicle control) was a component of the cell culture medium, not an additive to the medium, and as such, the osmolality of the experimental medium was not compromised. A 48 h incubation in the experimental medium had no adverse effects on the viability of the cells compared to the PromoCell culture medium. Cell culture reagents were from Sigma unless otherwise specified.
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Cultivating human skin fibroblasts and keratinocytes

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We cultivated primary human skin fibroblast lines (HF40 and HFF-1) (n = 2 each) that were obtained from the American Type Culture Collection (ATCC, Manassas, VA) and cultivated in Dulbecco's minimum essential medium supplemented with 10% fetal calf serum and, when confluent, medium was supplemented with or without recombinant human (rh)-IL-17 (R&D System, Minneapolis, MN) of 200 ng ml−1 (same IL-17 source and concentration used in prior experiments with human keratinocytes) [10] (link), [12] (link). After 24-hour incubation, fibroblasts were harvested for further analyses.
We also cultivated NHEKs obtained from PromoCell, in the Keratinocyte Growth Medium 2 supplemented with 0.004 ml/ml BPE, 0.125 ng/ml EGF, 5 ug/ml Insulin, 0.33 ug/ml Hydrocortisone, 0.39 ug/ml Epinephrine, 10 ug/ml Transferrin, and 0.06 mM Ca++ (all items purchased from PromoCell GmbH, Heidelberg, Germany). The experiment was performed in triplicate.
Once 70–80% confluent, the medium was changed with full media containing 0.06 mM Ca++, 1.2 mM Ca++, or 1.2 mM Ca++ plus 2.0% FBS, for 24 and 48 hours before harvesting for other analyses.
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