The largest database of trusted experimental protocols

6 protocols using ampicillin

1

Purification of GST-tagged Recombinant Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
GST-tagged recombinant proteins were expressed in E. coli BL21 transformed with pGEX-3X fusion constructs. For each protein, an aliquot of an overnight pre-culture was used to inoculate a fresh complex medium (LB) containing 50 μg/ml Ampicillin (Serva) and maintained at 37 °C up to mid-log phase (A600 = 0.4–0.6). Cultures were then incubated at 30 °C for 3 h with IPTG (1 mM) for induction. Bacterial cells were harvested and washed twice in cold PBS, before being resuspended in PBS (replaced by distilled water when samples were prepared for insect bioassays) and added with 1 ml acid-washed glass beads (710–1180 μm) (Sigma-Aldrich) for cell breaking through 5 cycles of vortexing (20 s at 100 W) and cooling in ice (20 s). Lysates were then centrifuged at 5,000 rpm for 30 min at 4 °C, and the resulting pellets and supernatants were stored at −20 °C for further use, after being quantified for protein content by Bio-rad Protein assay (Bio-rad).
GST-tagged proteins were purified from lysates following the Glutathione Sepharose 4 Fast Flow one-step protocol (GE Healthcare) according to manufacturer’s instructions, which allowed to collect different protein eluates.
The result of each expression and purification step was checked by SDS-PAGE or Western Blot analysis.
+ Open protocol
+ Expand
2

Quantification of Missense and WT mRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Quantification of missense and WT mRNA was done with total RNA of EHTs and of myectomy tissue received from the index patient. RNA (200 ng) was reverse‐transcribed to cDNA according to the instructions of the manufacturer's protocol (SuperScript™ III First‐Strand Synthesis System, Invitrogen). cDNA was amplified with PrimeStar® HS DNA Polymerase in a 50‐μl PCR approach, for 35 cycles according to the instructions of the manufacturer's protocol (Primers, Appendix Table S3). Generated PCR fragments were purified with the QIAquick PCR Purification Kit (Qiagen) and cloned with the CloneJET PCR Cloning Kit (Thermo Fisher Scientific) for discrimination of allele‐specific mRNA transcripts. Single colonies of transformed One Shot® TOP10 E. coli were transferred to overnight cultures [5 ml, lysogeny broth (BD), ampicillin (100 μg/ml; Serva)]. Plasmid extraction (NucleoSpin® Plasmid, Macheray‐Nagel) was performed the next day and send for sequencing (Eurofins Genomics).
+ Open protocol
+ Expand
3

Radiolabeled Glycine Betaine Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ectoine and 5-hydroxyectoine were kindly provided by the bitop AG (Witten, Germany). Anhydrotetracycline-hydrochloride (AHT) was purchased from IBA GmbH (Göttingen, Germany). Acetonitrile (HPLC-grade) was obtained from VWR International GmbH (Darmstadt, Germany). Ampicillin and all other chemicals were purchased from Serva Electrophoresis GmbH (Heidelberg, Germany) and Carl Roth GmbH (Karlsruhe, Germany). Radiolabeled [1-14C]glycine betaine (55 mCi mmol−1) was bought from American Radiolabeled Chemicals Inc. (St. Louis, MO; USA).
+ Open protocol
+ Expand
4

Ectoine and 5-Hydroxyectoine Compound Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ectoine and 5-hydroxyectoine were kind gifts from Dr. Thomas Lentzen and Dr. Irina Bagyan (bitop AG, Witten, Germany). 2-oxoglutarate (disodium salt) was obtained from Sigma-Aldrich (St. Louis, MO, USA). Anhydrotetracycline-hydrochloride (AHT), desthiobiotin, and Strep-Tactin Superflow chromatography material were purchased from IBA GmbH (Göttingen, Germany). X-Gal was obtained from AppliChem (Darmstadt, Germany), and the antibiotics kanamycin and ampicillin were purchased from Serva Electrophoresis GmbH (Heidelberg, Germany) and Carl Roth GmbH (Karlsruhe, Germany).
+ Open protocol
+ Expand
5

Preparation of Bacterial Growth Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
For all bacterial liquid cultures lysogeny broth (LB) was used as a medium. LB was prepared by dissolving 25 g LB Broth (Miller) powder (Sigma Aldrich, USA) in 1 l of MilliQ water, adjusting the pH to 7.0 with NaOH, and autoclaving. LB agar was prepared by adding 1.5% Select agar powder (Sigma Aldrich, USA) to the LB medium and autoclaving. After autoclaving the LB agar was left to cool before adding antibiotics and pouring 20 ml into sterile culture plates (VWR, Germany). Ampicillin (SERVA Electrophoresis, Germany), kanamycin (SERVA Electrophoresis, Germany), or chloramphenicol (SERVA Electrophoresis, Germany) were used at concentrations of 100 µg/ml, 50 µg/ml, and 34 µg/ml respectively when necessary.
+ Open protocol
+ Expand
6

Recombinant Protein Expression in E. coli

Check if the same lab product or an alternative is used in the 5 most similar protocols
The plasmid pGEX-EG95NC -was transformed into E. coli BL21(DE3). Culture of recombinant E. coli was performed in shake flasks. In order to provide the optimum conditions for aeration and mixing, the culture volume represented 20% of the total flask volume. Luria broth medium (LB) containing 100 µg/ml of ampicillin (Serva) was inoculated with the recombinant E. coli and incubated in a shaker incubator (MaxQ 4000, ThermoScientific) at 37°C, 200 rpm for 14 h. Cell density was measured until the OD (595nm) reached approximately 0.8-1 unit and dilution made for the second passage at OD 0.05 in LB medium containing ampicillin 100 µg/ml, followed by incubated with shaking.
Protein expression was induced by addition of isopropyl-β-D-thiogalactoside (IPTG, Promega) at a concentration of 0.5 mM. Assessment of levels of recombinant protein expression was performed for 5h every hour during cultivation, E. coli cell suspensions were centrifuged at 3500g (1-15PK; SIGMA). The culture supernatant was discarded and bacterial pellets suspended in loading buffer (Tris 50 mM, Glycine 200 mM, SDS 0.1 %, beta mercaptoethanol 5%, pH 8.3) and lysed in a water bath at 95°C for 5min before chilling on ice for SDS-PAGE analysis (Fig. 3).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!