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12 protocols using anti c met

1

Comprehensive Protein Expression Analysis

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Western blot analysis was conducted as previously described [24 (link)]. The following primary immunoblotting antibodies were used: anti-GAPDH, anti-E-cadherin, anti-Fibronectin, anti-Vimentin, anti-Snail, and anti-c-Met (Epitomics, Burlingame, CA, USA), anti-β-catenin (Proteintech, Chicago, USA), anti-N-cadherin, anti-c-myc, anti-EGFR, anti-p-EGFR (Tyr1068), anti-GSK3β, anti-p-GSK3β (Ser9), anti-AKT (pan), anti-p-AKT (Ser473), anti-stat3, anti-p-stat3 (Tyr705) and anti-CREB1 (Cell Signaling Technology, Beverly, MA).
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2

Tissue Microarray Analysis of Tumor Markers

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Tissue microarrays (TMAs) containing 46 cases with paired tumor and non-tumor tissues and 13 cases without corresponding non-tumor tissues were analyzed in this study. TMA was obtained from Xinchao Biotech, Shanghai, China. Paraffin tissue sections were dewaxed and rehydrated. Antigen retrieval was performed by heating the slides in sodium citrate buffer (10 mM, pH 6.0). After blocking with bovine serum albumin (Sango Biotech, Shanghai, China), the slides were incubated with anti-c-Met (Epitomics, Burlingame, CA, USA), anti-MITF (Cell Signaling Technology, Beverly, MA, USA), or anti-CREB1 (Cell Signaling Technology) overnight at 4 °C. The slides were then incubated with a secondary antibody of goat anti-rabbit HRP conjugate for 1 h at room temperature. A DAB solution was used for brown color development. The strength of positivity was semi-quantified by considering both the intensity and proportion of positive cells.
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3

Western Blot Analysis of Cell Signaling Proteins

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Western blot analysis was carried out as previously described,12 (link) with the following appropriate primary immunoblotting antibodies: anti-GAPDH (Sango Biotech), anti-c-Met, anti-AKT, anti-p-AKT, and anti-fibronectin (Epitomics), and anti-GSK-3β, anti-p-GSK-3β, anti-Snail, anti-E-cadherin, anti-CREB1, and anti-MITF (Cell Signaling Technology).
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4

Protein Expression Analysis by Western Blot

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Cellular proteins were extracted and separated in SDS-PAGE gels, and Western blot analyses were performed according to standard procedures. The membranes were immunoblotted with the following antibodies: anti-c-Met (1:500, Abcam), anti-Mecp2 (1:500, Abcam), and anti-Tublin (1:1000, Abcam). As a loading control, GAPDH detection was performed with primary antibody (1:5000, Abcam).
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5

Immunocytochemical Analysis of EpCAM-Positive Cells

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MACS-sorted EpCAM-positive cells were fixed in 4% paraformaldehyde, and cytospin preparations were conducted on “Probe-on-Plus” slides (Fisher Scientific, United States). Cells were blocked with 10% goat serum, and stained with mouse monoclonal anti-human EpCAM antibodies directly conjugated with FITC (Miltenyi Biotech, Germany), and co-stained with either anti-cytokeratin (CK) 8+18+19 or anti-c-Met (Abcam Inc., MA, United States) primary antibodies. Alexa 594 (Molecular Probes, United States) was used as the secondary antibody. Images were captured using a confocal laser scanning microscope (Leica, Germany, SP2 AOBS).
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6

Investigating CAF-Induced MET Activation

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WB was performed using conventional WB procedures. Primary antibodies were purchased from CST (Cell Signaling Technology, Danvers, MA, USA), including anti-HGF anti-phospho Met (#3133), anti-cMet (#8198), anti-Akt (#2920), anti-phospho-Akt (ser473, #4060), anti-pPDGFR (Tyr1009, #3124), and anti-phospho-Erk1/2 (Thr202/Tyr204, #4370).
Human cytokine antibody array (Abcam, Cambridge, USA, ab133998) was performed according to the manufacturer's instruction manual.
For MET activation and neutralization experiments, RKO cells were seeded in 24-well plates at a density of 40,000 cell per well in culture medium containing 10% FBS. One day before treatment, the wells were refreshed with medium containing 2% FBS. CAF CM diluted with culture medium (2% FBS) at 1:2 was added to the cells for 20 min at 37°C. Alternatively, the HGF neutralizing antibody was added to the diluted CAF CM and incubated for 1 h before treatment. The cells were lysed with a RIPA-containing phosphatase inhibitor cocktail for preparation of the WB samples.
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7

Protein Expression Analysis in Cells

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The HGF, cMET and EGFR expression was assessed by western blotting analysis and samples were normalized to GAPDH. Protein extraction was blocked with PBS-5% fat-free dried milk at RT for 1 h and incubated at 4 °C overnight with anti-HGF (1:1,000, Abcam), anti-EGFR (1:5,000, Abcam), anti-cMET (1:1,000, Abcam), anti-p-cMET (1:1,000, Abcam), anti-CD63 (1:2,000, Abcam), anti-TSG101 (1:1,000, Santa Cruz), anti-Alix (1: 1,000, Santa Cruz), anti-F4/80 (1:1,000, Abcam), anti-desmin (1:1,000, Immunoway), anti-α-SMA (1:1,000, Santa Cruz) and anti-GAPDH (1:3,000, Santa Cruz) antibodies, respectively.
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8

Protein Expression Analysis by Western Blot

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Western blot analysis was performed as described previously [16 (link)]. The primary antibodies were the following: anti-E-cadherin (1:1000, Cell Signaling Technology, USA), anti-N-cadherin (1:1000, Cell Signaling Technology), anti-Vimentin (1:1000, Abcam, USA), anti-activated caspase-3 (1:1000, Cell Signaling Technology), anti-total caspase-3 (1:1000, Cell Signaling Technology), anti-c-Met (1:1000, Abcam), and anti-GAPDH (1:1000, Santa Cruz Biotechnology, USA).
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9

Western Blot Analysis of Diverse Cellular Proteins

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Following antibodies were used for IB analysis. Anti-USP21 (catalog MA5-34953), anti-FOXD1 (catalog PA5-27142) were purchased from Invitrogen. Anti-TAZ (catalog ab84927), anti-C/EBPβ (catalog ab32358), anti-c-MET (catalog ab74217), anti-ALDH1A3 (catalog ab129815), anti-OLIG2 (catalog ab109186), anti-Flag (catalog ab205606), anti-Myc (catalog ab32), anti-HA (catalog 236632), and GAPDH (catalog ab8245) were purchased from Abcam. Anti-CD44 (catalog 3570), anti-p-STAT3 (catalog 9145), anti-STAT3 (catalog 9139), anti-mouse IgG (catalog 5415), anti-rabbit IgG (catalog 3900), and anti-GST (catalog 2624) were purchased from Cell Signaling Technology.
Samples or cells with indicated treatments were lysed with cell lysis buffer (Beyotime, catalog P0013) with protease Cocktail Inhibitor (MCE, catalog HY-K0010) at 4 °C for 30 minutes. The lysates were centrifugated at 12,000 rpm for 20 min. Cell lysates were subjected to SDS-PAGE, transferred onto a polyvinylidenedifluoride membrane (Roche, catalog 03010040001), followed by incubation overnight at 4 °C with primary antibodies. The membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies for 2 h. Proteins were then detected with the enhanced chemiluminescence methods.
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10

Immunohistochemical Analysis of Bone Biopsy

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Bone biopsy cores were immediately placed in buffered 10% formalin (Fisher Scientific, Waltham, MA) overnight at 4°C, rinsed with PBS then transferred to Immunocal (Decal Chemical Corporation, Tallman, NY) to decalcify for 1 to 2 hours. Samples were paraffin embedded, sectioned and stained with hematoxylin and eosin for immunohistochemistry. Antibodies used were: anti-cytokeratin CAM5.2 (BD349205; Becton-Dickinson. Franklin Lakes, NJ); anti-CMET (Cat# 51067; Abcam, Cambridge, MA), anti-pCMET (Cat# 44–888G; Invitrogen, Carlsbad, CA) and anti-VEGFR2/Flk-1 (SC-504; Santa Cruz Biotechnologies, Santa Cruz, CA) at 1:20, 1:200, 1:50, and 1:150 respectively. Antigen retrieval was performed with Diva Decloaker (DV2004, Biocare Medical, Concord, CA) for CMET and pCMET, and with Reveal (RV1000, Biocare Medical) for VEGFR2. Antibodies were optimized by titration using prostate cancer tissues. Results are presented as the expression index (EI) which is the product of the staining intensity x the percent positive cells.
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