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9 protocols using lsm 510 confocal microscopy system

1

Subcellular Localization of OsWAK112

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To investigate the subcellular localization of OsWAK112, the coding sequence of OsWAK112 from OsWAK112/pENTR was introduced into binary vector pMDC83 to construct the vector 35S:: OsWAK112-GFP, and 35S::GFP was used as a negative control vector. Both constructs were transferred to A. tumefaciens strain GV3101 and then transiently transformed into tobacco (N. benthamiana) leaves or transformed into onion (Allium cepa) epidermal cells by particle bombardment using the Bio-Rad PDS-1000/He system according to the manufacturer’s protocol. After 40 to 48h infiltration, localization of the protein was examined using a Zeiss LSM 510 confocal microscopy system with a 488nm laser for excitation from 500 to 515nm for GFP emission. 0.9M mannitol was used to induce plasmolysis.
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2

Immunostaining of Mouse Retinal Pigment Epithelium

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Whole mount tissues of RPE/choroid were prepared from 3- to 4-month-old mice, as described previously (20 (link)). The tissues were fixed in 4% paraformaldehyde and permeabilized with ice-cold acetone. After blocking in 10% (v/v) FBS/0.5% (v/v) Triton X-100/1×phosphate buffered saline (PBS), RPE flat mounts were stained with different antibodies. Nuclei were counterstained with Hoechst 33342 (Life Technologies). The F-actin-specific dye phalloidin (Life Technologies) was used to delineate the RPE boundaries. In some experiments, control RPE autofluorescence was determined using unstained whole mount tissues from the contralateral eye of the same animal.
For cell staining, cultured RPE cells were seeded on cover glass (20 (link)). After fixation, permeabilization, and blocking, cells were labeled with primary antibodies, followed by labeling with the appropriate secondary antibodies. After nuclear counterstaining, samples were mounted on glass slides with mounting medium (Electron Microscopy Service). Images were acquired with a Carl Zeiss LSM 510 confocal microscopy system. Data were analyzed with ImageJ software or Zen software.
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3

Visualizing H2O2 in Soybean Leaves

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Cytochemical localization of endogenous H2O2 generated in soybean leaves was detected by staining with specific fluorescence, the 2′,7′-dichlorofluorescein diacetate (DCFH-DA) following methods of Małecka et al. (2009 (link)) with minor modification. The fresh soybean leaves were submerged in 4 M DCFH-DA dissolved in 50 mM potassium phosphate buffer (pH 7.5) for 12 h. Leaves were washed twice with the loading buffer and then were observed with the Zeiss LSM 510 confocal microscopy system. Fluorescence was excited using 488 nm of an argon laser with emission at 500–550 nm. All images were obtained at the same depth, and were analyzed by the LSM Image Browser software, version 4.2.
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4

PMA-Induced Dynamics in LNCaP Cells

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LNCaP cells were plated at a density of 100,000 cells/plate on Ibidi μ-dishes (Ibidi, LLC, Verona, WI) and subcultured at 37°C in RPMI 1640 medium supplemented with 10% FBS and 2 mM L-glutamine. After 48 h in culture, cells were transfected with GFP-tagged recombinant constructs using Lipofectamine Plus reagent (Invitrogen) according to the manufacturer’s recommendations. After 24 hours, the cells were treated with 1000 nM of PMA in confocal medium (Dulbecco’s Modified Eagle Medium without phenol red supplemented with 1% FBS), and time-lapse images were collected every 30 s using the Zeiss AIM software. Imaging was performed with a Zeiss LSM 510 confocal microscopy system (Carl Zeiss, Inc.) with an Axiovert 100 M inverted microscope operating with a 25 mW argon laser tuned to 488 nm. A 63×1.4 NA Zeiss Plan-Apochromat oil-immersion objective was used together with varying zooms (1.4 to 2×). Imaging was performed in the Center for Cancer Research Confocal Microscopy Core facility.
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5

Membrane Localization of GFP-PH-AKT

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For membrane localization, 293 T cells were transfected with plasmids expressing either GFP or GFP-PH-AKT,28 (link) together with either full-length BTG3 or the d4 mutant. Localization was analyzed by confocal microscopy and quantified using ZEN 2008 software (Carl Zeiss, Oberkochen, Germany).
For staining of the 3D culture, the spheroids were fixed in chamber slides with 4% paraformaldehyde for 30 min at room temperature before permeabilization. The anti-laminin β1 antibody (ab69633; Abcam, Cambridge, MA, USA) was used at 1 : 200 dilution. Images were captured using a Zeiss LSM510 confocal microscopy system (Carl Zeiss Microscopy GmbH, Jena, Germany).
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6

Live-cell Imaging of PMA-induced Signaling

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LNCaP cells were plated at a density of 100,000 cells/plate on Ibidi μ-dishes (Ibidi, LLC, Verona, WI) and subcultured at 37 °C in RPMI 1640 medium supplemented with 10% FBS and 2 mm l-glutamine. After 48 h in culture, cells were transfected with GFP-tagged recombinant constructs, using X-tremeGENE HP DNA transfection reagent (Sigma) according to the manufacturer’s recommendations. After 24 h, the cells were treated as indicated with 100 nM, 1 μM and 10 μM of PMA in confocal medium (Dulbecco’s Modified Eagle Medium without phenol red supplemented with 1% FBS), and time-lapse images were collected every 30 s using the Zeiss AIM software. Imaging was with a Zeiss LSM 510 confocal microscopy system (Carl Zeiss, Inc.) with an Axiovert 100 M inverted microscope operating with a 25 mW argon laser tuned to 488 nm. A 63 × 1.4 NA Zeiss Plan-Apochromat oil-immersion objective was used together with varying zooms (1.4 to 2×). Imaging was performed in the Imaging Core Facility, Center for Cancer Research, Bethesda, MD.
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7

Synthesis and Characterization of Organic Compounds

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All reactions utilizing air- or moisture-sensitive reagents were performed in dried glassware under an atmosphere of nitrogen using commercially supplied solvents and reagents unless otherwise noted. CH2Cl2 was distilled from CaH2 and stored over molecular sieves. For thin-layer chromatography (TLC), precoated silica gel plates (Merck 60F254) were employed. TLC plates were visualized by fluorescence quenching under UV light and by staining with phosphomolybdic acid, p-anisaldehyde, or ninhydrin. Flash chromatography was performed with Wakogel C-200 (Wako Pure Chemical Industries, Ltd.) and silica gel 60 N (Kanto Chemical Co., Inc.). 1H NMR (400 or 500 MHz) and 13C NMR (125 MHz) spectra were recorded on a Bruker Avance III 400 spectrometer or a Bruker AVANCE 500 spectrometer. Chemical shifts are reported in δ (ppm) relative to Me4Si (in CDCl3) as the internal standard. Infrared (IR) spectra were recorded on a JASCO FT/IR 4100 and are reported as wavenumber (cm−1). Low- and high-resolution mass spectra were recorded on a Bruker Daltonics micrOTOF-2focus (ESI-MS) spectrometer in the positive or negative detection mode. For confocal laser scanning fluorescence images, cells were observed with a FluoView FV10i laser scanning confocal microscope (OLYMPUS, Japan) or a Zeiss LSM 510 confocal microscopy system (Carl Zeiss, Inc.).
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8

In Vivo Dox-Liposome Biodistribution

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The tumors were explanted 4 h or various time points (1 h, 4 h, and 24 h) after Dox-immunoliposomes or Dox-liposomes (360 μg of liposomes) intravenous administration in A549 tumor-bearing mice and preserved in 4% paraformaldehyde for 3 h at 4 °C. Then, the tumor tissues were transferred to the 30% sucrose PBS until the tissues were soaked at 4 °C. The tissues transfer to the 30% sucrose with tissue freezing compound (1:1 v/v, Tissue Tek OCT compound, Sakura Finetek, Torrance, CA, USA) for 30 min at 4 °C and the tissues were preserved in OCT compound at −80 °C. Five-micrometer-thick slides were processed for confocal imaging. The tumor nuclei were mounted with a mounting medium containing DAPI (Vectashield Mounting Medium with DAPI, Vector Laboratories, Burlingame, CA, USA). Fluorescence microscopy was performed to visualize the rhodamine-liposome (yellow/Cy3 channel), doxorubicin (red/FITC channel), and DAPI (blue channel) using a Zeiss LSM510 confocal microscopy system (Carl Zeiss GmbH, Aalen, Germany) equipped with krypton–argon and ultraviolet lasers, and the images were acquired using LSM version 5 software (Carl Zeiss).
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9

Visualizing PKCε Translocation in LNCaP Cells

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LNCaP cells were plated at a density of 100 000 cells per plate on Ibidi microdishes (Ibidi, LLC, Verona, WI) and cultured at 37 °C in RPMI-1640 medium supplemented with 10% FBS and 2 mM L-glutamine. After 48 h in culture, cells were transfected with a GFP-tagged recombinant PKCε construct using X-tremeGENE HP DNA transfection reagent (Sigma) according to the manufacturer’s recommendations. After 24 h, the cells were treated as indicated with 1 μM of PMA and 3 μM of DAG–lactone derivatives in confocal medium (Dulbecco’s modified Eagle medium without phenol red supplemented with 1% FBS), and time-lapse images were collected every 30 s using the Zeiss AIM software. Imaging was with a Zeiss LSM 510 confocal microscopy system (Carl Zeiss, Inc.) with an Axiovert 100 M inverted microscope operating with a 25 mW argon laser tuned to 488 nm. A 63 × 1.4 NA Zeiss Plan-Apochromat oil-immersion objective was used together with varying zooms (1.4 to 2×). The imaging was performed using the resources of the Confocal Microscopy Core Facility, Center for Cancer Research, National Cancer Institute.
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