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2 protocols using 3 2 hydroxyethyl indole

1

Indole-3-Acetic Acid Assimilation in Caballeronia glathei

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All IAA derivatives used in this study (indole-3-acetic acid, 3-(2-hydroxyethyl)indole, ethyl-3-indole-acetate, 3-(3-hydroxypropyl)indole, 3-indoleacetonitrile, indole-3-acetamide, indole-3-butyric acid, DL-indole-3-lactic acid, indole-3-propionic acid, tryptamine, indole-3-acrycil acid and indole-3-carboxylic acid) and H218O were purchased from Sigma-Aldrich. All cloning and protein expression reagents were from ThermoFisher Scientific (Vilnius, Lithuania). All other reagents used in this study were of analytical or higher grade.
Caballeronia glathei strain DSM50014 was obtained from the German Collection of Microorganisms and Cell Cultures (DSMZ), Braunschweig, Germany. This strain was routinely cultivated in M1 medium (5 g L−1 peptone, 3 g L−1 meat extract, pH 7). For the IAA assimilation experiments, C. glathei DSM50014 was cultivated in M9 medium (3.5 g L−1 Na2HPO4, 1.5 g L−1 KH2PO4, 2.5 g L−1 NaCl, 0.2 g L−1 MgSO4, 0.01 g L−1 CaCl2). Escherichia coli strains used in this study are listed in Supplementary Table S2. All E. coli strains were cultivated in LB medium. Ampicillin (50 μg mL−1) and streptomycin (30 μg mL−1) were added when necessary.
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2

Metabolomic Analysis of Aromatic Compounds

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HPLC-grade solvents dichloromethane, n-pentane, and methanol, LC–MS-grade methanol, acetonitrile, 2-propanol, chloroform, formic acid, ammonium formate, ethyl heptanoate, 1-heptanol, 2-octanol, ethyl hexanoate-d11, 3-(2-hydroxy ethyl)-indole, kynurenic acid, d-tryptophan methyl ester, L-tyrosine-ethyl ester, N-acetyl tyrosine-ethyl ester, and 3,5-di-tert-4-butylhydroxytoluene (BHT) were obtained from Sigma-Aldrich (St. Louis, MO, USA). C7–C30 n-alkane solution in n-hexane was purchased from Supelco (Bellefonte, PA, USA), while cholesterol-d7 and octadecanoic acid-d3 were obtained from CDN Isotopes (Quebec, QC, Canada). The chemical standards used to determine aromatic amino acid metabolites and lipid molecules were purchased from Aldrich-Fluka-Sigma S.r.L. (Milan, Italy), except for tryptophol-2-sulfonate (Tol-SO3H), indole-lactic acid-2-sulfonate (Ila-SO3H), and indole-acetic acid-2-sulfonate (IAA-SO3H) that were synthesized as described [26 (link)].
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